View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15661_low_3 (Length: 413)
Name: NF15661_low_3
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2278003 - 2277737
Alignment:
| Q |
1 |
tataggtttagggtttggtcaaagataaaacttataggttaaaggtttaatatgtaatttcaaaaatagagaaatgctattctatataaccaaataatgt |
100 |
Q |
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| T |
2278003 |
tataggtttagggttaggtcaaagataaaacttataggctaaaggtttaatatgtaatttcaaaaatagagaaatgctattctatataaccaaataatgt |
2277904 |
T |
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| Q |
101 |
tttagaattaaatgcaaaagcatgctattgctttctatcattgtactttttgcatgacacaaacacatgcatgccaactttttcctgtgtaaaaccgtag |
200 |
Q |
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| T |
2277903 |
tttagaattaaatgcaaaagcatactattgctttctatcattgtactttttgcatgacacaaacacatgcatgccaactttttcctgtgtaaaaccgtag |
2277804 |
T |
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| Q |
201 |
ccatgaatgaatgtttggtgatgttgagtaaatgcaattttctaaaccttactgtcagctgctttat |
267 |
Q |
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| T |
2277803 |
ccatgaatgaatgtttggtgatgttgagtaaatgcaattttctaaaccttactgtcagctgctttat |
2277737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 2277694 - 2277559
Alignment:
| Q |
263 |
tttatattgatcgtgatacatgatatatcttccaatatttttatcttatcgataattaatgtctcattataatgaaatatgtttannnnnnngaccgaaa |
362 |
Q |
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| T |
2277694 |
tttatattgatcgtgatacatgatatatcttccaatatttt-atcttatcgataattaatgtctcattataatgaaatatgtttatttttttgaccgaaa |
2277596 |
T |
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| Q |
363 |
aataaacaccagtatgttttaacttttaactcctttg |
399 |
Q |
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| T |
2277595 |
aataaacaccagtatgttttaacttttaactcctttg |
2277559 |
T |
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