View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15661_low_5 (Length: 388)
Name: NF15661_low_5
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 2278382 - 2278754
Alignment:
| Q |
1 |
aagacctagaacaatgacttgggttggaccatgcagtactttgtatatgtaatgtatgtacgtaggctttagcatatatttatgaagttttgtatattat |
100 |
Q |
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| T |
2278382 |
aagacctagaacaatgacttgggttggaccatgtagtactttgtatatgtaatgtatgtacgtaggctttagcatatatttatgaagttttgaatattat |
2278481 |
T |
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| Q |
101 |
tatgatatagt---actataaatataaatacttacgatggggtgtacatgagatacttgagaggtgggaagatatcaaagagccacttaggaacaatctc |
197 |
Q |
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| T |
2278482 |
tatgatatagtagtactataaatataaatacttacgatggggtgtacatgagatacttgagaggtgggaagatatcaaagagccacttaggaacaatctc |
2278581 |
T |
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| Q |
198 |
aaagttgcagtgacccaagttattcataaaatcaatataagtgacatatccaaccattgctccaatagaagctctatttgtgaagacaagggttaacttg |
297 |
Q |
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| T |
2278582 |
aaagttgcagtgacccaagttattcataaaatcaatataagtgacatatccaaccattgctccaatagaagctctatttgtgaagacaagggttaacttg |
2278681 |
T |
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| Q |
298 |
ggtattgcaaatagaaggaaatatgatatgtgttcagcaaatggatgaatgacagctgcaccaacacaatatt |
370 |
Q |
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| T |
2278682 |
ggtattgcaaatagaaggaaatatgatatatgttcagcaaatggatgaatgacagctgcaccagcacaatatt |
2278754 |
T |
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