View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15661_low_8 (Length: 243)

Name: NF15661_low_8
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15661_low_8
NF15661_low_8
[»] chr3 (42 HSPs)
chr3 (106-159)||(670981-671034)
chr3 (165-226)||(4157944-4158005)
chr3 (165-243)||(803218-803296)
chr3 (157-223)||(1891056-1891122)
chr3 (165-243)||(7432054-7432132)
chr3 (165-218)||(4142134-4142187)
chr3 (160-243)||(3754573-3754656)
chr3 (165-227)||(2459264-2459326)
chr3 (164-216)||(2456249-2456301)
chr3 (165-216)||(2442039-2442090)
chr3 (165-220)||(2696732-2696787)
chr3 (167-217)||(9608346-9608396)
chr3 (167-216)||(13498224-13498273)
chr3 (164-216)||(771498-771550)
chr3 (167-222)||(968665-968720)
chr3 (157-216)||(7324423-7324482)
chr3 (157-216)||(43991960-43992019)
chr3 (165-243)||(989369-989447)
chr3 (169-227)||(997565-997623)
chr3 (169-227)||(1013955-1014013)
chr3 (165-223)||(1940579-1940637)
chr3 (165-215)||(2631358-2631408)
chr3 (164-206)||(44001605-44001647)
chr3 (165-214)||(23197014-23197063)
chr3 (164-216)||(1437996-1438047)
chr3 (164-216)||(2644361-2644413)
chr3 (164-216)||(2659151-2659203)
chr3 (157-216)||(783791-783850)
chr3 (165-220)||(1931154-1931209)
chr3 (157-216)||(2476634-2476693)
chr3 (165-216)||(37753345-37753396)
chr3 (165-243)||(956354-956432)
chr3 (165-223)||(1007454-1007512)
chr3 (165-223)||(1022482-1022540)
chr3 (157-223)||(1897669-1897735)
chr3 (157-223)||(1907115-1907181)
chr3 (165-243)||(1936980-1937058)
chr3 (157-215)||(2492083-2492141)
chr3 (165-243)||(3745981-3746059)
chr3 (164-213)||(9587184-9587233)
chr3 (164-216)||(754608-754660)
chr3 (164-216)||(7334238-7334290)
[»] chr5 (12 HSPs)
chr5 (165-227)||(23766862-23766924)
chr5 (165-227)||(23816710-23816772)
chr5 (167-216)||(20292995-20293044)
chr5 (160-218)||(11081811-11081869)
chr5 (167-216)||(20301443-20301492)
chr5 (167-216)||(20305856-20305905)
chr5 (167-216)||(20310260-20310309)
chr5 (166-218)||(3181715-3181767)
chr5 (165-218)||(23769646-23769699)
chr5 (165-218)||(23819494-23819547)
chr5 (165-227)||(23861026-23861088)
chr5 (169-227)||(41973474-41973532)
[»] chr4 (5 HSPs)
chr4 (165-227)||(20019772-20019834)
chr4 (165-227)||(20016185-20016248)
chr4 (160-210)||(55419788-55419838)
chr4 (166-216)||(11032910-11032960)
chr4 (165-227)||(22672127-22672189)
[»] chr2 (9 HSPs)
chr2 (165-213)||(7168690-7168738)
chr2 (165-216)||(7160754-7160805)
chr2 (165-216)||(7156192-7156243)
chr2 (165-216)||(7174373-7174424)
chr2 (165-216)||(36577366-36577417)
chr2 (165-207)||(6538843-6538885)
chr2 (165-227)||(20538007-20538069)
chr2 (164-217)||(33038159-33038212)
chr2 (157-206)||(34560909-34560958)
[»] scaffold0015 (2 HSPs)
scaffold0015 (166-217)||(32330-32381)
scaffold0015 (166-217)||(40382-40433)
[»] scaffold0044 (1 HSPs)
scaffold0044 (164-217)||(89142-89195)
[»] chr6 (10 HSPs)
chr6 (165-206)||(1442108-1442149)
chr6 (164-215)||(24417485-24417536)
chr6 (167-212)||(9703888-9703933)
chr6 (167-212)||(9819831-9819876)
chr6 (165-213)||(370785-370833)
chr6 (165-212)||(176338-176385)
chr6 (159-212)||(1470917-1470970)
chr6 (167-212)||(9825517-9825562)
chr6 (165-214)||(19119065-19119114)
chr6 (165-214)||(19126359-19126408)
[»] chr7 (2 HSPs)
chr7 (166-217)||(1421170-1421221)
chr7 (165-212)||(3927063-3927110)
[»] chr1 (8 HSPs)
chr1 (175-217)||(23896147-23896189)
chr1 (167-216)||(24629213-24629262)
chr1 (177-218)||(24634817-24634858)
chr1 (166-218)||(24513054-24513106)
chr1 (166-217)||(25478864-25478915)
chr1 (166-216)||(24626773-24626823)
chr1 (165-217)||(51381455-51381507)
chr1 (165-217)||(51858605-51858657)
[»] scaffold0200 (1 HSPs)
scaffold0200 (169-227)||(782-840)
[»] chr8 (1 HSPs)
chr8 (169-242)||(19727855-19727928)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 670981 - 671034
Alignment:
Q  106 tctgcagatttcattgaccattagttaacaatgaacaatgatgtaacatacaac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  670981 tctgcagatttcattgaccattagttaacaatgaacaatgatgtaacatacaac 671034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 4157944 - 4158005
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaa 226  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaa 4158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 803218 - 803296
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    |||| ||||||||||| |||||| |||||||||| ||||||| ||||||||||| |||||||| ||| |||||||||||    
T  803218 acaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaatc 803296  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1891056 - 1891122
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    |||| ||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  1891056 aacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgacca 1891122  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 7432054 - 7432132
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    ||||||||||||| || |||||| |||||||||||||||||  ||||||||||||||||| ||| || |||||||||||    
T  7432054 acaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatc 7432132  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 4142134 - 4142187
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4142134 acaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 3754656 - 3754573
Alignment:
Q  160 agtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||  |||||||  ||  |||||||||||    
T  3754656 agtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatc 3754573  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 2459326 - 2459264
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    ||||||| |||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaa 2459264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 2456301 - 2456249
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  2456301 tacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 2442090 - 2442039
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 2696732 - 2696787
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatga 220  Q
    |||||||| ||||||| |||||| |||||||||||||||||| |||||||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacatcatga 2696787  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 771498 - 771550
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| ||| || |||||||||||||||||| |||||||||    
T  771498 tacaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 968720 - 968665
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacc 222  Q
    ||||||||||| || |||||| |||||| ||||||||||| |||||||||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacatcatgacc 968665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 7324423 - 7324482
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||| ||||||||||||||||||| |||||| |||| || |||||||||| |||||||||    
T  7324423 aacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 43992019 - 43991960
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||| |||||||||| |||||||| ||| || |||||||||||||||||| |||||||||    
T  43992019 aacactatacaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 989447 - 989369
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    |||||||||||||||| |||||| |||| || || ||||| | ||||||||||| ||||||||  || |||||||||||    
T  989447 acaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaagcaatc 989369  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 997623 - 997565
Alignment:
Q  169 tttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||| ||| ||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 997565  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 1014013 - 1013955
Alignment:
Q  169 tttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||| ||| ||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 1013955  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 1940579 - 1940637
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    ||||||||||||| || |||| | |||||| ||||||||||| ||||||||||||||||    
T  1940579 acaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca 1940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacat 215  Q
    |||||||||||||||| |||| | |||||||||||||||||| ||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 44001647 - 44001605
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataa 206  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  44001647 tacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 23197063 - 23197014
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaaca 214  Q
    |||||||||||||||| |||| | |||||||||||||||| |||||||||    
T  23197063 acaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 1438047 - 1437996
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||| ||||||| |||||| |||||||||||||||||| |||||||||    
T  1438047 tacaatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 2644361 - 2644413
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| |||| | ||||||| |||||||||| |||||||||    
T  2644361 tacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 2659151 - 2659203
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| |||| | ||||||| |||||||||| |||||||||    
T  2659151 tacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 783791 - 783850
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||||||| |  | | || |||||||||||||||||| |||||||||    
T  783791 aacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 1931154 - 1931209
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatga 220  Q
    ||||||||||||| || |||||| |||||| |||| |||||| |||||||||||||    
T  1931154 acaatttagtccaggagtctttatttccatgttccatcataacccaaacatcatga 1931209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 2476693 - 2476634
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||| ||||||||||||||||| |||||| ||||||| |  ||||||| |||||||||    
T  2476693 aacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||||| |||||  |||||||||||| ||||| |||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 956432 - 956354
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    ||||||||  |||||| |||||  |||||||||||||||||| |||||||||   |||| ||| ||| |||||||||||    
T  956432 acaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatc 956354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 1007512 - 1007454
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    ||||||||||||| || || ||| |||||||||||||||| | ||||||||||| ||||    
T  1007512 acaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 1022540 - 1022482
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    ||||||||||||| || || ||| |||||||||||||||| | ||||||||||| ||||    
T  1022540 acaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1897669 - 1897735
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    |||| ||||||| |||| ||| || || ||| |||||| ||||||||||| ||||||||||||||||    
T  1897669 aacactatacaacttagcccacgagtcattatttccatgttccttcataatccaaacatcatgacca 1897735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1907115 - 1907181
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgacca 223  Q
    |||| ||||||| |||| ||| || || ||| |||||| ||||||||||| ||||||||||||||||    
T  1907115 aacactatacaacttagcccacgagtcattatttccatgttccttcataatccaaacatcatgacca 1907181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 1936980 - 1937058
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    ||||||||| ||| || |||||| ||  |||||||||||||| ||||||||||| |||| ||| ||| ||||| |||||    
T  1936980 acaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatc 1937058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 2492141 - 2492083
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataagccaaacat 215  Q
    |||| ||||||||||||||||||| |||  | ||||||| |||||||||| ||||||||    
T  2492141 aacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 3746059 - 3745981
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaatc 243  Q
    |||||||||||||||| ||||   || ||||||||||||||| ||||| ||||| |||||||  ||  |||||||||||    
T  3746059 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatc 3745981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 9587184 - 9587233
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaac 213  Q
    |||||||| |||||||  |||||| |||||||||||||||||| ||||||    
T  9587184 tacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 754608 - 754660
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| |||| |  |||||| |||||||||| |||||||||    
T  754608 tacaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 7334238 - 7334290
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||| |||||| |||| || |||||||| | |||||||||    
T  7334238 tacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 23766862 - 23766924
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||||||| |||||| |||||||||| ||||||| ||||||||||| ||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 23816710 - 23816772
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||||||| |||||| |||||||||| ||||||| ||||||||||| ||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23816772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 11081869 - 11081811
Alignment:
Q  160 agtatacaatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    |||| |||||||||||||||| |||||| ||||||| |||||||||| |||||||||||    
T  11081869 agtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    ||||||| ||||||| |||| | ||||||||||||||||||||||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23769646 - 23769699
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    ||||||||||||||||  ||||| | |||||||||||||||| |||||||||||    
T  23769646 acaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23819494 - 23819547
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    ||||||||||||||||  ||||| | |||||||||||||||| |||||||||||    
T  23819494 acaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 23861026 - 23861088
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    ||||||||||||||||  |||| || |||||||||||||| | ||||||||||| || |||||    
T  23861026 acaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaa 23861088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 41973474 - 41973532
Alignment:
Q  169 tttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    ||||||||| ||  ||||| || ||||||||||||||| ||||||||||||| ||||||    
T  41973474 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaa 41973532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 20019772 - 20019834
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||||||||||| ||||||||    
T  20019772 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 20019834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 20016185 - 20016248
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagcc-aaacatcatgaccagaaa 227  Q
    |||||||||||||||| |||| |||||||||||||||||| | || ||||||||| ||||||||    
T  20016185 acaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaaa 20016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 55419838 - 55419788
Alignment:
Q  160 agtatacaatttagtccaagaatctttaattccatattccttcataagcca 210  Q
    |||| ||||||||||||||||||||||| |||||||  |||||||||||||    
T  55419838 agtaaacaatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||| ||||||| |||||| |||| ||||||||||| |||||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 22672127 - 22672189
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||||||| || ||| |||||||||||||||| | |||||| || | ||||||||    
T  22672127 acaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaa 22672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 7168690 - 7168738
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaac 213  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  7168690 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 7160754 - 7160805
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  7160754 acaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 7156192 - 7156243
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||    
T  7156192 acaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 7174373 - 7174424
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||| |||||    
T  7174373 acaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 36577417 - 36577366
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||| ||||||| |||||| |||||||||||||||||| |||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 6538885 - 6538843
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataag 207  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  6538885 acaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 20538069 - 20538007
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    |||||||||||||||| |||| |||||||||||| ||||| | ||| | ||||||||| ||||    
T  20538069 acaatttagtccaagattcttaaattccatattcattcatgacccatatatcatgacccgaaa 20538007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 33038212 - 33038159
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    |||||| |||||||||| | |||  |||||||||||||||||| ||||||||||    
T  33038212 tacaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 34560909 - 34560958
Alignment:
Q  157 aacagtatacaatttagtccaagaatctttaattccatattccttcataa 206  Q
    |||| ||||||||||||||||||| | |||| |||||||||| |||||||    
T  34560909 aacactatacaatttagtccaagattttttatttccatattctttcataa 34560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 32330 - 32381
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 32381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 40382 - 40433
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    ||||||| ||||||| |||||| || ||||||||||||||||||||||||||    
T  40382 caatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 89195 - 89142
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||    
T  89195 tacaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 1442108 - 1442149
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataa 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  1442108 acaatttagtccaagaatctttaattccataatccttcataa 1442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 24417485 - 24417536
Alignment:
Q  164 tacaatttagtccaagaatctttaattccatattccttcataagccaaacat 215  Q
    ||||||||||||||||| |||||| |||||||||| ||||||| ||||||||    
T  24417485 tacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 370785 - 370833
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaac 213  Q
    ||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 176385 - 176338
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    ||||||||||||||||||||||| ||||||| || |||||| ||||||    
T  176385 acaatttagtccaagaatctttatttccataatcattcatacgccaaa 176338  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 1470917 - 1470970
Alignment:
Q  159 cagtatacaatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    ||||| ||||||||| ||||||||||||| ||||||| || ||||||| |||||    
T  1470917 cagtaaacaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    |||||||||||||| | | || ||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 19119114 - 19119065
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaaca 214  Q
    |||||||||||||||| |||| | |||||||||||||||| | |||||||    
T  19119114 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 19126408 - 19126359
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaaca 214  Q
    |||||||||||||||| |||| | |||||||||||||||| | |||||||    
T  19126408 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 1421170 - 1421221
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 3927110 - 3927063
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaa 212  Q
    |||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  3927110 acaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 23896147 - 23896189
Alignment:
Q  175 ccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatca 23896189  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  167 aatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||| ||||||| |||||| |||| |||||||||||||||||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 24634817 - 24634858
Alignment:
Q  177 aagaatctttaattccatattccttcataagccaaacatcat 218  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  24634817 aagactctttaattccgtattccttcataagccaaacatcat 24634858  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 24513106 - 24513054
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatcat 218  Q
    ||||||| |||| || |||||| |||||||||| |||||||||||||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacatcat 24513054  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 25478915 - 25478864
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    ||||||| ||||||| |||||| | || ||||||||||||||||||||||||    
T  25478915 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 25478864  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 24626773 - 24626823
Alignment:
Q  166 caatttagtccaagaatctttaattccatattccttcataagccaaacatc 216  Q
    |||||||  |||||| ||||||||||  |||||||||||||||||||||||    
T  24626773 caatttaacccaagactctttaattctgtattccttcataagccaaacatc 24626823  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 51381455 - 51381507
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    |||||||||||||||| |||| | |||||||||| ||||||| ||||| ||||    
T  51381455 acaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 51858657 - 51858605
Alignment:
Q  165 acaatttagtccaagaatctttaattccatattccttcataagccaaacatca 217  Q
    |||||||||||||||| |||  | |||||||||||||||| | ||||||||||    
T  51858657 acaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 782 - 840
Alignment:
Q  169 tttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaa 227  Q
    ||||||||| ||  ||||| || ||||||||||||||| ||||||||||||| ||||||    
T  782 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaa 840  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 19727928 - 19727855
Alignment:
Q  169 tttagtccaagaatctttaattccatattccttcataagccaaacatcatgaccagaaagcatacacaagcaat 242  Q
    ||||||||| || |||||| || |||||||  |||||| ||||||||||| |||||||| ||| ||||| ||||    
T  19727928 tttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaat 19727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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