View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15662_high_11 (Length: 239)
Name: NF15662_high_11
Description: NF15662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15662_high_11 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22200077 - 22199839
Alignment:
| Q |
1 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttaggaatcatctcaaacaaaaatctttgataggcatgaaagtgtgatgaa |
100 |
Q |
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| T |
22200077 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttaggaatcatctcaaataaaaatctttgataggcatgaaagtgtgatgaa |
22199978 |
T |
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| Q |
101 |
tatatgatggatggatgcccattagtcattggatcaaacagatggcctattaattcattcctgaactcttgtatttctctataattaaatatggttcatt |
200 |
Q |
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| T |
22199977 |
tatattatggatggatgcccattagtcattggatcaaacagatggcctattaattcattcccgaactcttgtatttctctataattaaatttggttcatt |
22199878 |
T |
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| Q |
201 |
cgtaatagaatcatatacataaaaaatactatttctttc |
239 |
Q |
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| T |
22199877 |
cgtaatagaatcatatacataaaaaatactatttctttc |
22199839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 22166819 - 22166762
Alignment:
| Q |
22 |
tttatatcactcaattgatgacttaaccttaggaatcatctcaaacaaaaatctttga |
79 |
Q |
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| T |
22166819 |
tttacatcactcaattgattacttaaccttaaaaaacatatcaaacaaaaatctttga |
22166762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10709523 - 10709471
Alignment:
| Q |
1 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttag |
53 |
Q |
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| T |
10709523 |
tcaataaatcaaatttatctctttacatcactcaattgattacttaaccttag |
10709471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10923293 - 10923241
Alignment:
| Q |
1 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttag |
53 |
Q |
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|||||| |||| ||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
10923293 |
tcaataaatcaaatttatctctttacatcactcaattgattacttaaccttag |
10923241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 22199625 - 22199575
Alignment:
| Q |
42 |
acttaaccttaggaatcatctcaaacaaaaatctttgataggcatgaaagt |
92 |
Q |
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| T |
22199625 |
acttaacctcaggaaacatctcaaataaaaatctttgataatcatgaaagt |
22199575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10666874 - 10666926
Alignment:
| Q |
1 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttag |
53 |
Q |
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|||||| |||| || |||| ||||| |||||||||||||| |||||||||||| |
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| T |
10666874 |
tcaataaatcaaatatatctctttacatcactcaattgattacttaaccttag |
10666926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10881019 - 10881071
Alignment:
| Q |
1 |
tcaatatatcatatttatccctttatatcactcaattgatgacttaaccttag |
53 |
Q |
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|||||| |||| || |||| ||||| |||||||||||||| |||||||||||| |
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| T |
10881019 |
tcaataaatcaaatatatctctttacatcactcaattgattacttaaccttag |
10881071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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