View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15662_high_4 (Length: 457)
Name: NF15662_high_4
Description: NF15662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15662_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 99 - 426
Target Start/End: Complemental strand, 22044199 - 22043871
Alignment:
| Q |
99 |
acacaaagaccacttccctacacatgcttgtactctaaagtt-gaaggagcactagaacatgtcacacacatgaactatcattaaaaaatgtgtatagaa |
197 |
Q |
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| T |
22044199 |
acacaaggaccacttgcctacacatgcttgtactctaaagtttgaaggagcactagaacatgtcacacacatgaactatcattaaaaaatgtgtatagaa |
22044100 |
T |
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| Q |
198 |
cctggatgggtctaaacatgtatagacacacacttgaattatcataaagactataattcatatatcaaaaatagaaatgctaaacaagagaagcagttgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22044099 |
cctggatgggtctaaacatgtatagacacacacttgaattatcataaagactataattcatatatcaaaaatagaaatgctaaacaagagaagcagttgg |
22044000 |
T |
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| Q |
298 |
aactgcaagattctacctcaagcacaaaacattgacatattggtacaatgaataggtgcagtgacaaaagagtgtcaattaaatgcaggaagtcaagtta |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
22043999 |
aactgcaagattctacctcaagcacaaaacattgacatattggtacaatgaataggtgcagtgacaaaagagtgtcaattaaatgcaggaagtgatgtta |
22043900 |
T |
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| Q |
398 |
aaagtttgaaaaatgtatatcgcattcag |
426 |
Q |
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| T |
22043899 |
aaagtttgaaaaatgtatatcgcattcag |
22043871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 245 - 440
Target Start/End: Original strand, 2422848 - 2423048
Alignment:
| Q |
245 |
agactataattcatatatcaaaaatagaaatgctaaacaagagaagcagttggaactgcaagattctacctcaagcacaaaacattgacatattggta-- |
342 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
2422848 |
agactctaattcatatataaaaaatagaaatgctaaacaagagaaccagttggaactgcaagattctacctctagcaaaaaacattgacatattggtatt |
2422947 |
T |
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| Q |
343 |
----caatgaataggtgcagtgacaaaagagtgtcaattaaatgcaggaagtcaagttaaaagtttgaaaaatgtatatcgcattcagacgtaacaagat |
438 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2422948 |
ggtacaatga-taggtgcagtgacaaaagattgtcaattaaatgcagcaagtgaagttaaaagtttgaaaaatgtatatcacattcagacgtaacaagat |
2423046 |
T |
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| Q |
439 |
ac |
440 |
Q |
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|| |
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| T |
2423047 |
ac |
2423048 |
T |
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