View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15662_high_7 (Length: 433)
Name: NF15662_high_7
Description: NF15662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15662_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 12186592 - 12186313
Alignment:
| Q |
18 |
taatgaaccttctatttgttgaacaattccacctagatattacttcgttcgaatcggtaattaattcctttgattgtctctaagttaaaacttggttaac |
117 |
Q |
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| T |
12186592 |
taatgaaccttctatttgttgaacaattccacctagatattacttcgttcgaatctgtaattaattcctttgattgtctctaagttaaaacttggttaac |
12186493 |
T |
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| Q |
118 |
agaaagatcaaaatcttgtatgctaacatgcaatcttcttttgtcttcttggttgtcttaacannnnnnnccatgacaagcagatagatcattacattaa |
217 |
Q |
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| T |
12186492 |
agaaagatcaaaatcttgtatgctaacatgcaatcttcttctgtcttcttggttgtcttaacatttttttccatgacaagcagatagatcattacattaa |
12186393 |
T |
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| Q |
218 |
ctttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttattagaggaaaactcaaagcaaaga |
297 |
Q |
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| T |
12186392 |
ctttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttattagaggaaaactcaaagcaaaga |
12186313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 12186242 - 12186109
Alignment:
| Q |
292 |
caaagattcgatagagagatttcatttccagtttcattttcgaaactaaacactaaacacctgacaca------aaggctaagattaatatcaacacgca |
385 |
Q |
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| T |
12186242 |
caaagattcgatagagagatttcatttccagtttcattttcgaaactaaacactaaacacctgacacaatgactaaggctaagattaatatcaacacaca |
12186143 |
T |
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| Q |
386 |
c--cttattcttcttaccatatttctctatttat |
417 |
Q |
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| T |
12186142 |
cctcttattcttcttaccatatttctctatttat |
12186109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 12187415 - 12187348
Alignment:
| Q |
209 |
ttacattaactttcattcacctgaatatagcataaaacacattaagaataagcaacaatactttatta |
276 |
Q |
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| T |
12187415 |
ttacagtaattttcattcacctgaatatagcagaaaacacgttaagaataagtaacaatattttatta |
12187348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 8980092 - 8980018
Alignment:
| Q |
96 |
tctaagttaaaacttggttaacagaaagatcaaaatcttgtatgctaacatgcaatcttcttttgtcttcttggt |
170 |
Q |
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| T |
8980092 |
tctaagttacaacttagttaacataaagctcaaaatcttctattgtagcatgcaatcttcgtttgtcttcttggt |
8980018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 8979886 - 8979842
Alignment:
| Q |
252 |
aagaataagcaacaatactttattagaggaaaactcaaagcaaag |
296 |
Q |
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| T |
8979886 |
aagaaaaagcaacaatacttttttagaggaagattcaaagcaaag |
8979842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 5446132 - 5446195
Alignment:
| Q |
233 |
atatagcataaaacacattaag-aataagcaacaatactttattagaggaaaactcaaagcaaaga |
297 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |
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| T |
5446132 |
atatagcagaaaacacattaagtaataagcaacaatactt--tgagaggaaaattcaaagaaaaga |
5446195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 5455176 - 5455239
Alignment:
| Q |
233 |
atatagcataaaacacattaag-aataagcaacaatactttattagaggaaaactcaaagcaaaga |
297 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |
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| T |
5455176 |
atatagcagaaaacacattaagtaataagcaacaatactt--tgagaggaaaattcaaagaaaaga |
5455239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 21664757 - 21664825
Alignment:
| Q |
112 |
gttaacagaaagatcaaaatcttgtatgctaacatgcaatcttcttttgtcttcttggttgtcttaaca |
180 |
Q |
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||||||| ||||||||||||||| |||| || |||||| ||||| | | |||||||||| |||| |||| |
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| T |
21664757 |
gttaacataaagatcaaaatcttctatggtagcatgcagtcttcatctatcttcttggtcgtctcaaca |
21664825 |
T |
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