View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15662_low_2 (Length: 753)
Name: NF15662_low_2
Description: NF15662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15662_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 45305566 - 45306182
Alignment:
| Q |
1 |
agttaagaaaaaagggaaaagaagtgagtggcaatgaccaaaataaaaatggcaagacctagctagctagttgaaatgaaaagggtgcatatatatggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305566 |
agttaagaaaaaagggaaaagaagtgagtggcaatgaccaaaataaaaatggcaagacctagctagctagttgaaatgaaaagggtgcatatatatggca |
45305665 |
T |
|
| Q |
101 |
tatataggttgattgatgctgctatgagatggtaataacaaaaaccataaccattgttaattagttgaggag--ggagattgatgactgaatagaatgaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45305666 |
tatataggttgattgatgctgctatgagatggtaataacaaaaaccataaccattgttaattagttgaggagatggagattgatgactgaatagaatgaa |
45305765 |
T |
|
| Q |
199 |
ctcttcttctaggtcacatgaattgcaagagagggagagagaatggtataatattgttggatgaatatgggacaaaagatagagatgaggttgactaggc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45305766 |
ctcttcttctaggtcacatgaattgcaagagag------agaatggtataatattgttggatgaatatgggacaaaagat-gagatgaggttgactaggc |
45305858 |
T |
|
| Q |
299 |
tttaagnnnnnnnnnnnnnnnnagcgtggaattctgggagattgatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcat |
398 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305859 |
tttaaggagggagagagaga--agcgtggaattctgggagattgatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcat |
45305956 |
T |
|
| Q |
399 |
gagcctcatcactcatttattgttctcttttacgtctcgtgcctttcacactaattctcaatccgaactgctccctctttcgcccttttctttgtctatt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45305957 |
gagcctcatcactcatttattgttctcttttacgtctcgtgcctttcacactaattctcaatccgaactgctccctctttcacccttttctttgtctatt |
45306056 |
T |
|
| Q |
499 |
ttgctgtccaatctccatgcatgtacggttcaactcgaatacttctttcttttttcacctctacgatccgataataccatataa-gtatcttctttctca |
597 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
45306057 |
ttgctgtccaatctccttgcatgtacggttcaagtcgaatacttc-ttcttttttcacctctacgatctgataataccatataatgtatcttctttctca |
45306155 |
T |
|
| Q |
598 |
ataaaatacatacatacagtattatat |
624 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45306156 |
ataaaatacatacatacagtattatat |
45306182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 620 - 711
Target Start/End: Original strand, 45306221 - 45306312
Alignment:
| Q |
620 |
tatatgaacaaagaaaataattaaataatatatatttttgtgactgctcaaatgatatatgtttaaatggttgtaatcatacaagtatatat |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45306221 |
tatatgaacaaagaaaataattaaataatatatatttttgtgactgctcaaatgatatatgtttaaatggttgtaatcatacaagtatatat |
45306312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University