View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15662_low_6 (Length: 435)

Name: NF15662_low_6
Description: NF15662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15662_low_6
NF15662_low_6
[»] chr3 (2 HSPs)
chr3 (254-435)||(2782238-2782419)
chr3 (2-159)||(2782514-2782671)
[»] chr2 (4 HSPs)
chr2 (2-151)||(42048555-42048704)
chr2 (321-418)||(42048402-42048499)
chr2 (368-423)||(23665539-23665594)
chr2 (287-435)||(4162230-4162381)
[»] chr5 (2 HSPs)
chr5 (321-396)||(25341498-25341573)
chr5 (369-422)||(18557386-18557439)
[»] chr8 (3 HSPs)
chr8 (1-157)||(31180275-31180430)
chr8 (321-424)||(31180005-31180107)
chr8 (1-70)||(40530945-40531014)
[»] chr4 (2 HSPs)
chr4 (368-424)||(40813960-40814016)
chr4 (354-424)||(17416689-17416759)
[»] chr7 (2 HSPs)
chr7 (371-422)||(25153079-25153130)
chr7 (7-42)||(26231849-26231884)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 254 - 435
Target Start/End: Complemental strand, 2782419 - 2782238
Alignment:
Q  254 cctttggatgttttccctacgcgttctagggtttgtttgtagggattggtgatgttgttttgctgtcttggtgatgttcaagtggtggtgatgtaggtta 353  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| || ||     
T  2782419 cctttggatgttttccctacgcgttatggggtttgtttgtagggattggtgatgatgttatgttgtcttggtgatgttcaagtggtggtgatgcagtttg 2782320  T
Q  354 attttgtatcttgatttggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttctctagcttacgaat 435  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  2782319 attttgtagcttgatttggtttgtttatgctcgagctggttcgatttgcgctgttgttccaccttttctttggcttacgaat 2782238  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 2782671 - 2782514
Alignment:
Q  2 tgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgctacgggatcactg 101  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||| |||    
T  2782671 tgcaattgtggtggatccagtctttagatggttggtggtttatctcctttacgatgaaaggcggtacattaagtagcttgctgttggtacgagatcgctg 2782572  T
Q  102 tgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttggggtgcgt 159  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2782571 tgcttcgggtgtttgcgtgtggtttctgtggatctctagtggtgttgttggggtgcgt 2782514  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 42048704 - 42048555
Alignment:
Q  2 tgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgctacgggatcactg 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||   ||||| |||| ||||  |||||| ||  ||    
T  42048704 tgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaagatggtacggtaagtatcttgttgtttgtacggggtcgttg 42048605  T
Q  102 tgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttg 151  Q
    ||| | ||||||| ||||||||||| | ||||||||||||| ||||||||    
T  42048604 tgcgttgggtgttcgcgtgtggtttatatggatctctggtggtgttgttg 42048555  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 42048499 - 42048402
Alignment:
Q  321 ttggtgatgttcaagtggtggtgatgtaggttaattttgtatcttgatttggtttgtttatgctcgagctggttcgatttgcgttgttgttccacctt 418  Q
    |||||||||||| |||||||| |||| | ||| |||||||  |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  42048499 ttggtgatgttctagtggtggcgatgcatgttgattttgtggcttgttttggtttgtttatgttcgagctggttcgatttgcattgttgttccacctt 42048402  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 23665594 - 23665539
Alignment:
Q  368 tttggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttctc 423  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||    
T  23665594 tttggtttgtttatgttcgagttggtttgatttgcgctgttgttccaccttttctc 23665539  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 435
Target Start/End: Complemental strand, 4162381 - 4162230
Alignment:
Q  287 tgtttgtagggattggtgatgttgttttgctgtctt-ggtgatgttcaagtggtggtgatgtaggttaattttgtatcttgattt--ggtttgtttatgc 383  Q
    |||||||||||| ||||||||| ||  ||||| ||| || ||||||||||||||||||||| ||| | |||||||  |||| |||  ||||||| | ||     
T  4162381 tgtttgtagggagtggtgatgtcgtgctgctgcctttggagatgttcaagtggtggtgatggaggatgattttgttgcttgtttttaggtttgtgtgtgt 4162282  T
Q  384 tcgagctggttcgatttgcgttgttgttccaccttttctctagcttacgaat 435  Q
    ||  | |||||||||||| | |  ||||||||||| |||||  |||||||||    
T  4162281 tcatgttggttcgatttgtgctactgttccaccttgtctctgtcttacgaat 4162230  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 25341498 - 25341573
Alignment:
Q  321 ttggtgatgttcaagtggtggtgatgtaggttaattttgtatcttgatttggtttgtttatgctcgagctggttcg 396  Q
    |||||| ||||||||||||||||||| |||||||||||||  |||| |||| ||||||| ||||||||||||||||    
T  25341498 ttggtgttgttcaagtggtggtgatgcaggttaattttgtggcttgttttgatttgtttgtgctcgagctggttcg 25341573  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 18557386 - 18557439
Alignment:
Q  369 ttggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttct 422  Q
    ||||||||||  || ||||||||| |||||||||| ||||||||||||||||||    
T  18557386 ttggtttgttgttgttcgagctggatcgatttgcgctgttgttccaccttttct 18557439  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 31180430 - 31180275
Alignment:
Q  1 gtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgctacgggatcact 100  Q
    ||||| ||||||||||| |||||| ||||||||||||||| | |||||||  ||  |||||| ||||||  |||||||||| ||||| |  ||||| | |    
T  31180430 gtgcagttgtggtggattcagtctttggatggttggtggtgtctctccttcgcgccgaaagaaggtacaataagtagcttgttgttggtttgggataatt 31180331  T
Q  101 gtgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttggggtgc 157  Q
    ||||||  |||||||||| || |||| |||| |||| ||||| ||||| || |||||    
T  31180330 gtgctttaggtgtttgcgagt-gtttatgtgaatctttggtggtgttggtgtggtgc 31180275  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 424
Target Start/End: Complemental strand, 31180107 - 31180005
Alignment:
Q  321 ttggtgatgttcaagtggtggtgatgtaggttaattttgtatcttgatttggtttgtttatgctcgagctggttcgatttgcgttgttgttccacctttt 420  Q
    |||||||||||||||||||||||||| ||||| ||||  |  |||| ||| |||||||| || || ||||| |||||||| || | ||| ||||||||||    
T  31180107 ttggtgatgttcaagtggtggtgatgcaggttgatttcatggcttg-ttttgtttgtttgtgttcaagctgtttcgattttcgctattgctccacctttt 31180009  T
Q  421 ctct 424  Q
    ||||    
T  31180008 ctct 31180005  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40530945 - 40531014
Alignment:
Q  1 gtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacat 70  Q
    ||||| ||||||||||||||||| ||||||| || | | ||| |||||||  ||| ||||||||||||||    
T  40530945 gtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggtacat 40531014  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 40814016 - 40813960
Alignment:
Q  368 tttggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttctct 424  Q
    ||||||||||||||  ||||||||||||| |||||| |  |||||||||||||||||    
T  40814016 tttggtttgtttatattcgagctggttcgttttgcgctactgttccaccttttctct 40813960  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 17416759 - 17416689
Alignment:
Q  354 attttgtatcttgatttggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttctct 424  Q
    |||||||  |||| |||| ||||||| || ||||||||||||| |||||| | ||||| ||||||||||||    
T  17416759 attttgtggcttgttttgatttgtttgtgttcgagctggttcgctttgcgctattgtttcaccttttctct 17416689  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 25153079 - 25153130
Alignment:
Q  371 ggtttgtttatgctcgagctggttcgatttgcgttgttgttccaccttttct 422  Q
    |||||||||||| |||||||||||| |||| ||||| |||||||||| ||||    
T  25153079 ggtttgtttatgttcgagctggttcaatttacgttgctgttccacctattct 25153130  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 26231849 - 26231884
Alignment:
Q  7 ttgtggtggatccagtctctggatggttggtggttt 42  Q
    |||||||||||||||| |||||||||||||||||||    
T  26231849 ttgtggtggatccagtttctggatggttggtggttt 26231884  T

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