View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_10 (Length: 441)
Name: NF15663_high_10
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 44927953 - 44927540
Alignment:
| Q |
19 |
tcaacttctgcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagcgcacatgaacactatacatttgatggaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44927953 |
tcaacttctgcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagtgcacatgaacactatacatttgatggaga |
44927854 |
T |
|
| Q |
119 |
tcattttaacaatcacattattatatgtaatagtttagcatctattatttctttttccttctcctgttgcattagctccttaatggggcgataggctgca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927853 |
tcattttaacaatcacattattatatgtaatagtttagcatctaccatttctttttccttctcctgttgcattagctccttaatggggcgataggctgca |
44927754 |
T |
|
| Q |
219 |
gtggtgcacaagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagtagggaatatatgaaaaagagaatgacaaacaaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
44927753 |
gtggtgcacaagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagcaggga--atatgaaaaagagaatgacaaacaaact |
44927656 |
T |
|
| Q |
319 |
gaaccttaaggtcgcttccactatatccttctgtcatagttgaaagctctttgaagtctatatcttcgtgtttttccttagctagaagagttttcaagat |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927655 |
gaaccttaaggtcgcttccactatatccttctgtcatagttgaaagctctttgaagtctatatcttcgtgtttttccttagctagaagagttttcaagat |
44927556 |
T |
|
| Q |
419 |
cgtttccttcatctca |
434 |
Q |
| |
|
||||||| || ||||| |
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|
| T |
44927555 |
cgtttccctcttctca |
44927540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 192 - 425
Target Start/End: Complemental strand, 45989614 - 45989388
Alignment:
| Q |
192 |
agctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcattatcacgacaaaccagaagtagggaata |
291 |
Q |
| |
|
|||||||||| || || ||| |||||||| |||||||||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||| || |
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|
| T |
45989614 |
agctccttaagggcgcaatatgctgcagtcgtgcacaagttctgtttacataaattaatgtcaatagat---tatcaccacaaa--agaagtaggtaac- |
45989521 |
T |
|
| Q |
292 |
tatgaaaaagagaatgacaaacaaactgaaccttaaggtcgcttccactatatccttctgtcatagttgaaagctctttgaagtctatatcttcgtgttt |
391 |
Q |
| |
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|| |||| |||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45989520 |
ta-gaaatagagaatgaccaacaaaatgaaccttaagatcacttccactatatccttctgtcatagttgaaagctctttgaagtctatatcttcatgttt |
45989422 |
T |
|
| Q |
392 |
ttccttagctagaagagttttcaagatcgtttcc |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
45989421 |
atccttagctagaagagttttcaagatagtttcc |
45989388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 165 - 425
Target Start/End: Complemental strand, 44936260 - 44936008
Alignment:
| Q |
165 |
atttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcatt |
264 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
44936260 |
atttctttttccttctcctgttgtattagctccttaagggggcgatatgctgcagtcatgcacaagttctgtttacagaaattaatgtcaatag---att |
44936164 |
T |
|
| Q |
265 |
atcacgacaaaccagaagtagggaatatatgaaaaagagaatgacaaacaaactgaaccttaaggtcgcttccactatatccttctgtcatagttgaaag |
364 |
Q |
| |
|
||||| || ||| |||||||||| || |||| ||||| || || ||| | ||||||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
44936163 |
atcaccaccaac---aagtagggaa-cta-gaaattgagaaagatcaataaaattaaccttaagatcacttccgctatatccttctgtcatagttgaaag |
44936069 |
T |
|
| Q |
365 |
ctctttgaagtctatatcttcgtgtttttccttagctagaagagttttcaagatcgtttcc |
425 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||||||||| |||||||||||| |||||| |
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|
| T |
44936068 |
ctcttcgaagttcatattttcagatttttccttagctagaatagttttcaagattgtttcc |
44936008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 45994349 - 45994238
Alignment:
| Q |
318 |
tgaaccttaaggtcgcttccactatatcctt----ctgtcatagttgaaagctctttgaagtctatatcttcgtgtttttccttagctagaagagttttc |
413 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||| |
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|
| T |
45994349 |
tgaaccttaagatcacttccactgtatccttaattctgtcatagttgaaagctctttgaagtctaaatcttcatgtttatccttagctataagagttttc |
45994250 |
T |
|
| Q |
414 |
aagatcgtttcc |
425 |
Q |
| |
|
||||| |||||| |
|
|
| T |
45994249 |
aagattgtttcc |
45994238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 45994476 - 45994358
Alignment:
| Q |
165 |
atttctttttccttctcctgttgcattagctccttaatggggcgataggctgcagtggtgcacaagttctgtttacagaaattaatgtcaagagatcatt |
264 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||| |||||| |||| |||||||| || || |
|
|
| T |
45994476 |
atttctttttctttctcctgttgtattagctccttaagggggcgatatgctgcagtcatgcacaagttctctttacataaatcaatgtcaatag---gtt |
45994380 |
T |
|
| Q |
265 |
atcacgacaaaccagaagtagg |
286 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
45994379 |
atcaccacaaaccagaaatagg |
45994358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 27404138 - 27404030
Alignment:
| Q |
19 |
tcaacttctgcctcctttttcttctttttctgaaataagtggtggttaatgttattacttagctttacagcgcacatgaacactatacatttgatggaga |
118 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||| | |||| |||| || ||||| ||| |||| |
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|
| T |
27404138 |
tcaaattctgcctcctctttcttcttttcctgaaataagtggt---------tattacttagttttacatcacaca--aacaatacacattggatagaga |
27404050 |
T |
|
| Q |
119 |
tcattttaacaatcacatta |
138 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27404049 |
tcattttaacaatcacatta |
27404030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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