View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_11 (Length: 427)
Name: NF15663_high_11
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 90 - 409
Target Start/End: Complemental strand, 51364929 - 51364611
Alignment:
| Q |
90 |
atgaacattcaattgaagatttggaaattgactttgtggattgtagcaactctctttattggactaaagtgcatactgatacgctaattaataattgtga |
189 |
Q |
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| T |
51364929 |
atgatcattcaattgaagatttggaaattgactttgtggattgtagcaactctctttattggactaaagtgcatactgatacgctaattaataattgtga |
51364830 |
T |
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| Q |
190 |
ttttaggttaattggatgtagcaaatggaatggttacacatagttgggtaatgtgtgtttaaatgtagtcaattgaaagtgatgaggtactcatccgaat |
289 |
Q |
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| T |
51364829 |
ttttaggttaattggatgtagcaaatagaatggttacacatagttgggtaatgtgtgtttaaatgtagtcaattgaaagtgatgaggtactcatccgaat |
51364730 |
T |
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| Q |
290 |
gaattaatctaaaaagaaactttactttctgtctatgatttaaactttactccataaatttgttttgtctctcatttgttaacgtgccgggtcaaaaaga |
389 |
Q |
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| T |
51364729 |
gaatgaatctaaaatgaaactttactttctgtctatgatttaaacttgactccataaatttgttttgtctctcatttgttaacgtgccgggtc-aaaaga |
51364631 |
T |
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| Q |
390 |
tcacaccaacccctccttac |
409 |
Q |
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|||||||||||||||||||| |
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| T |
51364630 |
tcacaccaacccctccttac |
51364611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 51364968 - 51364923
Alignment:
| Q |
17 |
atgaatataaattggaacatatgcgatatctacatgtgtatgatca |
62 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51364968 |
atgaatataaattggtacatatgcgatatctacatgtgtatgatca |
51364923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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