View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_14 (Length: 334)
Name: NF15663_high_14
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 7434718 - 7435039
Alignment:
| Q |
13 |
caaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcattcttacaagt |
112 |
Q |
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| T |
7434718 |
caaagggatattcgctttacactaaagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcattcttacaagt |
7434817 |
T |
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| Q |
113 |
tacaatggaaatgcaaaccacatcactatgcaaatagaaagagagttaatcttcataataaaattgacaaagcaaaattcatattatcaaatggttactt |
212 |
Q |
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| T |
7434818 |
tacaatggaaatgcaaaccacatcactatgcaaatagaaagagagttaatcttcaaaataaaattgacaaagcaaaattcatattatcaaatggttactt |
7434917 |
T |
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| Q |
213 |
aatttgccaagcacttgatcacgaatatgatatgtgcaactggcaagccacttccaatacaaaaagtaaaaacctccataacagtcctcttgggtcaaaa |
312 |
Q |
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| T |
7434918 |
aatttgccaagcacttgatcacaaatatgatatgtgcaaccggcaagccacttccaatacaaaaagtaagaacctccataacagtcctcttgggtcaaat |
7435017 |
T |
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| Q |
313 |
caaacagaaaaagttaattatg |
334 |
Q |
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| T |
7435018 |
caaacagaaaaagttaattatg |
7435039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 7523623 - 7523827
Alignment:
| Q |
16 |
agggatattcgctttacacta--aagacttccaaatataatctatatctacataaaattggaggtcattcagtagaggcaaaagatcattcttacaagtt |
113 |
Q |
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| T |
7523623 |
agggatattctcattacactataaagatttccaaatataatctatatctacataaaattagaggtcattcagtagaggcaaaagatcattcttacaagtt |
7523722 |
T |
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| Q |
114 |
acaatggaaatgcaaaccacatcactatgcaaatagaaagagagttaatcttcataataaaattgacaaagcaaaattcatattatcaaatggttactta |
213 |
Q |
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| T |
7523723 |
acaatggaaatgcaaaccatgtcagtatgcgaatagaaaaagagtaaaacttcaaaataaaattgacaaagcaaaattcatattatcaaatggttactta |
7523822 |
T |
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| Q |
214 |
atttg |
218 |
Q |
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||||| |
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| T |
7523823 |
atttg |
7523827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 7521074 - 7520942
Alignment:
| Q |
69 |
aattggaggtcattcagtagaggcaaaagatcattcttacaagttacaatggaaatgcaaaccacatcactatgcaaatagaaagagagttaatcttcat |
168 |
Q |
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||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
7521074 |
aattgaaggtcgttcaggagaggcagaagatcaatcttacaagttacaatggaaatgcaaaccacatcaatatgcaaat----agagagtaaatcttcaa |
7520979 |
T |
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| Q |
169 |
aataaaattgacaaagcaaaattcatattatcaaatg |
205 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
7520978 |
aataaaattgataaagcaaaattcatattatctaatg |
7520942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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