View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_16 (Length: 309)
Name: NF15663_high_16
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_16 |
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| [»] scaffold0648 (2 HSPs) |
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| [»] scaffold0271 (2 HSPs) |
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| [»] scaffold0274 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 41415371 - 41415087
Alignment:
| Q |
17 |
aaatataaaaccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaacnnnnnnnnnnnn--tcatcattatcatgatcc |
114 |
Q |
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| T |
41415371 |
aaatataaaaccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaacaaaaacaaaaaaaatcatcattatcatgatcc |
41415272 |
T |
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| Q |
115 |
tataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41415271 |
tataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatgagcttcaatccacttggc |
41415172 |
T |
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| Q |
215 |
acaagcatcctccccgtgttcaactatgcactcatctcgcagcctcttcgtgtcaggacaagcgcaacagattttcttcttcttc |
299 |
Q |
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| T |
41415171 |
acaagcatcctccccgtgttcaactatgcactcatctcgcagcctcttcgtgtcaggacaagcgcaacagattttcttcttcttc |
41415087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 41417010 - 41416957
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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| T |
41417010 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctataattccaa |
41416957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 501 - 700
Alignment:
| Q |
97 |
tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg |
196 |
Q |
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| T |
501 |
tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg |
597 |
T |
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| Q |
197 |
agcttcaatccacttggcacaagcatcctccccgtgttcaactatgcactcatctcgcagcctcttcgtgtcaggacaagcgcaacagattttcttcttc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
598 |
agcttcaatccacttggcacaagcatcctccccgtgttccactatgcactcatcccgcagcctctttgtgtcaggacaagcgcagcagattttcttcttc |
697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 4842 - 4789
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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| T |
4842 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
4789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 14881 - 15080
Alignment:
| Q |
97 |
tcatcattatcatgatcctataacaattcttattattatttcaaagaattaccgattaatctcaaacattgaatccttcagcacgaagacaaattcgatg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
14881 |
tcatcattatcatgatcctataacaattcttattattatcttaaagaattaccaatt---ctcaaacattgaatccctcagcacgaagacaaattcgatg |
14977 |
T |
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| Q |
197 |
agcttcaatccacttggcacaagcatcctccccgtgttcaactatgcactcatctcgcagcctcttcgtgtcaggacaagcgcaacagattttcttcttc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
14978 |
agcttcaatccacttggcacaagcatcctccccgtgttccactatgcactcatcccgcagcctctttgtgtcaggacaagcgcagcagattttcttcttc |
15077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 12826 - 12879
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
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| T |
12826 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
12879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 1246 - 1192
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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| T |
1246 |
ccataaatccgctgaaatttt--taatttgaactaaacaaccattctatcattccaa |
1192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 4312 - 4259
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
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| T |
4312 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
4259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 22909 - 22962
Alignment:
| Q |
27 |
ccataaatccgctgaaatttttataatttgaactaaataagcattctataattccaa |
83 |
Q |
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||||||||||||||||||||| ||||||||||||| || |||||||| ||||||| |
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| T |
22909 |
ccataaatccgctgaaatttt---aatttgaactaaacaaccattctatcattccaa |
22962 |
T |
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