View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15663_high_18 (Length: 290)

Name: NF15663_high_18
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15663_high_18
NF15663_high_18
[»] chr3 (10 HSPs)
chr3 (19-279)||(36313307-36313567)
chr3 (20-272)||(36325686-36325938)
chr3 (19-279)||(36327549-36327809)
chr3 (19-194)||(36336078-36336253)
chr3 (19-127)||(36333374-36333482)
chr3 (27-111)||(36320713-36320797)
chr3 (147-203)||(36320836-36320892)
chr3 (147-279)||(36333508-36333638)
chr3 (135-198)||(36309326-36309389)
chr3 (226-279)||(36336285-36336338)
[»] chr5 (1 HSPs)
chr5 (148-278)||(16053144-16053274)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 36313307 - 36313567
Alignment:
Q  19 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313307 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 36313406  T
Q  119 tcacaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313407 tcacaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtg 36313506  T
Q  219 aaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313507 aaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgt 36313567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 36325686 - 36325938
Alignment:
Q  20 atggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagt 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |    
T  36325686 atggcgagcacacgaagttcactgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaataacaaaagccattttatcagatt 36325785  T
Q  120 cacaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtga 219  Q
    ||| ||| | ||||| |     |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||   ||||||    
T  36325786 cacgagaagcaaaccatcctactgaaaatttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtga 36325885  T
Q  220 aattacaaccttctccaaccgcggaagctttctcacagcttcactaaatcctt 272  Q
    |||  |||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  36325886 aatgtcaaccttctctaacagcggaagctttctcaaggcttcactaaatcctt 36325938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 36327549 - 36327809
Alignment:
Q  19 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 118  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||    
T  36327549 aatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgccattttatcagag 36327648  T
Q  119 tcacaagatgtaaaccttgaatttacaa-atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgt 217  Q
    ||||||||| | |  |    ||  |||| ||||||| |||||||||||||||||  | ||||| ||||||| |||||| ||||| ||||||| |  ||||    
T  36327649 tcacaagat-tcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgt 36327747  T
Q  218 gaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgt 279  Q
    |||||  ||| |||||||||  | |||||||||||||  |||||| ||||||||||||||||    
T  36327748 gaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgt 36327809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 36336078 - 36336253
Alignment:
Q  19 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 118  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||  ||| |||||||||||    
T  36336078 aatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgccattttatcagag 36336177  T
Q  119 tcacaagatgtaa---accttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagag 194  Q
    ||||||||   ||   | | ||||||   | | | |||| |||||||||||||||| ||||||||||||||||||||||    
T  36336178 tcacaagagtcaagcgagcatgaatt---atactgaagccatttcaaaagagggcaagatcgaccaagggcttcaagag 36336253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 36333374 - 36333482
Alignment:
Q  19 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||||||||    
T  36333374 aatggcgagcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttatcagag 36333473  T
Q  119 tcacaagat 127  Q
    || ||||||    
T  36333474 tcgcaagat 36333482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 36320713 - 36320797
Alignment:
Q  27 gcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt 111  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||    
T  36320713 gcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccatttt 36320797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 36320836 - 36320892
Alignment:
Q  147 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcag 203  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  36320836 atttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcag 36320892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 36333508 - 36333638
Alignment:
Q  147 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaag 246  Q
    |||||||| ||||||||||| |||| |||||||||||  ||||||||||  |||| |||||  ||  || ||||||  | || ||||||||| | |||||    
T  36333508 atttaagcaatttcaaaagatggcaagatcgaccaagaacttcaagaga--catcggttagacagcaatatgaaatgtccactttctccaactgtggaag 36333605  T
Q  247 ctttctcacagcttcactaaatccttcatctgt 279  Q
    ||||||||  |||| || |||||||| ||||||    
T  36333606 ctttctcatggctttaccaaatcctttatctgt 36333638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 36309326 - 36309389
Alignment:
Q  135 ttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagac 198  Q
    |||| ||| |||||| |||||| |||||||||||||| |||||||||||  ||||||| |||||    
T  36309326 ttgattttccaaattcaagcgacttcaaaagagggcaagatcgaccaagcacttcaagggagac 36309389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 36336285 - 36336338
Alignment:
Q  226 aaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgt 279  Q
    ||||||||| ||||||||||||||||| ||| | ||||| ||| ||||||||||    
T  36336285 aaccttctctaaccgcggaagctttctaacaacatcactgaattcttcatctgt 36336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 16053144 - 16053274
Alignment:
Q  148 tttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagc 247  Q
    |||||| ||||||||||||||||| ||||| |||||| || ||| ||| || ||||||||   || || |||||| |||| |||||| ||| ||||||||    
T  16053144 tttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctcagttagcctgttatctgaaatgacaagcttctctaacagcggaagc 16053243  T
Q  248 tttctcacagcttcactaaatccttcatctg 278  Q
    || ||||||||||||||||||||||| ||||    
T  16053244 ttcctcacagcttcactaaatccttcttctg 16053274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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