View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_27 (Length: 234)
Name: NF15663_high_27
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 734875 - 734656
Alignment:
| Q |
1 |
tgctttctttatatttggtatgtatattcttcacatggttatccgtatcttacgatatatttgagtcatatctcgatttgatactaaattgaactcgatc |
100 |
Q |
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| T |
734875 |
tgctttctttatatttggtatgtatattcttcacatggttatccgtatcttacaatatatttgagtcatatctcgatttgatactaaattgaactcgatc |
734776 |
T |
|
| Q |
101 |
gcgttgaacaccagacacaccttcgatccgaatattatgcatcattttatatcatgacattagtatatgtcttgtttttgaggtaaaagataggataaga |
200 |
Q |
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| T |
734775 |
gcgttgaacaccagacacaccttcgatccgaatattatgcatcattttatatcatgacattagtatatgtcatgtttttgaggtaaaagataggataaga |
734676 |
T |
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| Q |
201 |
tctgaattcttggttaatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
734675 |
tctgaattcttggttaatat |
734656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 33895203 - 33895262
Alignment:
| Q |
34 |
catggttatccgtatcttacgatatatttgagtcatatctcgatttgatactaaattgaa |
93 |
Q |
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| T |
33895203 |
catggttatcagtatcttacaatacatgtgagttttatctcaatttgatactaaattgaa |
33895262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 3113135 - 3113179
Alignment:
| Q |
34 |
catggttatccgtatcttacgatatatttgagtcatatctcgatt |
78 |
Q |
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| T |
3113135 |
catggttatcagtatcttacgatacatgcgagtcatatctcgatt |
3113179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 30864066 - 30864010
Alignment:
| Q |
45 |
gtatcttacgatatatttgagtcatatctcgatttgatactaaattgaactcgatcg |
101 |
Q |
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||||||||||||| || |||||| |||||||||| |||||||| ||||||| |||| |
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| T |
30864066 |
gtatcttacgatacatgtgagtcgtatctcgattcaatactaaaatgaactcaatcg |
30864010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 44914783 - 44914843
Alignment:
| Q |
34 |
catggttatccgtatcttacgatatatttgagtcatatctcgatttgatactaaattgaac |
94 |
Q |
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|||||||||| |||||||||||| || ||| || ||||||||| ||||||||||||||| |
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| T |
44914783 |
catggttatcactatcttacgatacatgcgagccaaatctcgattcgatactaaattgaac |
44914843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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