View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_5 (Length: 523)
Name: NF15663_high_5
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 518
Target Start/End: Original strand, 44643004 - 44643500
Alignment:
| Q |
17 |
atttacaccataactgcttcccataaatggatcaccaagattgtttatgtgaaaatgaagtaaaggtgccaatgcactatagtcaaagctctgattagta |
116 |
Q |
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| T |
44643004 |
atttacaccataactgcttcccataaatggatcaccaacattgtttatgtgaaaatgaagtaaaggtgccaatgcactatagtcaaagctctgattagta |
44643103 |
T |
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| Q |
117 |
gggtaacctgctttggaaaatatatcaatacgtatacatatactttttaccaagtatagaaacagcggatagaggttttgtctgcttgttttctattcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| |
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| T |
44643104 |
gggtaacctgctttggaaaatatatcaatacgtatacatatactttttaccaaatatagaaacagccgataaa-----tgtctgcttgttttctattcat |
44643198 |
T |
|
| Q |
217 |
gtgtaattaatctttcatatatgaaaattgaacaagattgaaattataaaataaaaaacatacctaaaagatgagatatttcttgatttagggtccctgc |
316 |
Q |
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| T |
44643199 |
gtgtaattaatctttgatatatgaaaattgaaaaagattgaaattataaaataaaaagcatacctaaaagatgagatatttcttgatttagggtccctgc |
44643298 |
T |
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| Q |
317 |
atagtgattaataacttcagccaatttgccttgggactccccagtgcaattggtgatggcaaggttcatattatgtccattattattttcttcttgaatt |
416 |
Q |
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| T |
44643299 |
atagtgattaataacttcagccaatttgccttgggactccccagtgcaattggtgatggcaaggttcatattatgtccattattattttcttcttgaatt |
44643398 |
T |
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| Q |
417 |
ttacaatccttatctttttctcttgagggctccaagccatgaacttgtggaatattgaaagatatcttcatgtcttcttgtacttgattctcctttgctt |
516 |
Q |
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| T |
44643399 |
ttacaatccttatctttttctcttgagggctccaagccatgaacttgtggaatattgaaagatatcttcatgtcttcttgtacttgattctccattgatt |
44643498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 44670119 - 44670232
Alignment:
| Q |
17 |
atttacaccataactgcttcccataaatggatcaccaagattgtttatgtgaaaatgaagtaaaggtgccaatgcactatagtcaaagctctgattagta |
116 |
Q |
| |
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||||||||||||||| || |||||||||||||| ||| |||||||||||||||||| || |||||||||||||| || |||||| | |||||||| |
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| T |
44670119 |
atttacaccataactactacccataaatggatctccagcattgtttatgtgaaaatgtagcaaaggtgccaatgcgtcgtaatcaaagttttgattagtg |
44670218 |
T |
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| Q |
117 |
gggtaacctgcttt |
130 |
Q |
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| T |
44670219 |
gggtaccctgcttt |
44670232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 380
Target Start/End: Original strand, 44671184 - 44671297
Alignment:
| Q |
267 |
ataaaaaacatacctaaaagatgagatatttcttgatttagggtccctgcatagtgattaataacttcagccaatttgccttgggactccccagtgcaat |
366 |
Q |
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| T |
44671184 |
ataaaaagtatacccaaaaaatgtgatattttttgatttagtgtcccctcgtagtgagtaataatttcatctaatttggcatgtgtctccccattgcaat |
44671283 |
T |
|
| Q |
367 |
tggtgatggcaagg |
380 |
Q |
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| T |
44671284 |
tggtgatggcaagg |
44671297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 35455855 - 35455824
Alignment:
| Q |
207 |
ttctattcatgtgtaattaatctttcatatat |
238 |
Q |
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| T |
35455855 |
ttctattcatgtgtaattaatctttcatatat |
35455824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 2520934 - 2520978
Alignment:
| Q |
194 |
ttgtctgcttgttttctattcatgtgtaattaatctttcatatat |
238 |
Q |
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| T |
2520934 |
ttgtccgcttgccttctattcatgtgtaattaatctttgatatat |
2520978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 32233601 - 32233569
Alignment:
| Q |
206 |
tttctattcatgtgtaattaatctttcatatat |
238 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
32233601 |
tttctattcatgtgtaattaatctttgatatat |
32233569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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