View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_high_9 (Length: 445)
Name: NF15663_high_9
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 82 - 430
Target Start/End: Original strand, 6880634 - 6880993
Alignment:
| Q |
82 |
aaagcaaataacatattttatccacacacttcttaccaataaagacgacctaccatgtggagaatttataagaagtttatgtttttgaaatt-------- |
173 |
Q |
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| T |
6880634 |
aaagcaaataacatattttatccacacacttcttaccaataaagacgacctaccatgtggagaatttataagaggtttatgtttttgaaattgtatacct |
6880733 |
T |
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| Q |
174 |
---tggagtcccttcgagcagtgtttcgatacggaactaaaatttacatcttgttttgggagagcactccataaggccttgaggaaagaactgagactga |
270 |
Q |
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| T |
6880734 |
tcatggagtcccttcgagcagtgtttcgatacggaactaaaatttacatcttattttggaagagcactccataaggccttggggaaagaactgagaccga |
6880833 |
T |
|
| Q |
271 |
gtccgacttatcgtcctcagatcgatggacatattgaaaggactatctcgtcgttataagannnnnnngtgtttcagataatcgttgaaggttggatgac |
370 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
6880834 |
gtccgacttatcgtcctcagatcgatggacatattaaaaggactatctcgtcgttacaagatttttttgtgtttcagataatcgttaaaggttggatgac |
6880933 |
T |
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| Q |
371 |
ttgttgccactattgaaattttagtagaatcacaattttcatgcaagaaatgaaatgaca |
430 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
6880934 |
ttgttgccactattgaaattttagaagaatcacaattttcatgcaagaaatggaatgaca |
6880993 |
T |
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