View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15663_low_1 (Length: 677)

Name: NF15663_low_1
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15663_low_1
NF15663_low_1
[»] chr5 (4 HSPs)
chr5 (20-670)||(656255-656906)
chr5 (564-623)||(12842972-12843031)
chr5 (569-623)||(37022666-37022720)
chr5 (572-623)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (477-559)||(3896085-3896167)
chr4 (477-557)||(3144996-3145076)
chr4 (569-623)||(14027054-14027108)
chr4 (569-623)||(6746689-6746743)
chr4 (569-616)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (568-623)||(29526-29581)
scaffold0015 (569-623)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (568-623)||(86508-86563)
chr8 (568-623)||(91825-91880)
chr8 (568-623)||(19802979-19803034)
chr8 (569-623)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (568-623)||(11716628-11716683)
chr7 (569-623)||(13167037-13167091)
chr7 (570-623)||(11711383-11711436)
chr7 (568-623)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (568-623)||(16777801-16777856)
chr6 (568-623)||(32703873-32703928)
chr6 (569-623)||(16772466-16772520)
chr6 (569-623)||(32708250-32708304)
chr6 (569-621)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (568-623)||(4100097-4100152)
chr3 (568-623)||(5383349-5383404)
chr3 (568-623)||(6806583-6806638)
chr3 (569-623)||(5378014-5378068)
chr3 (569-623)||(13719155-13719209)
chr3 (568-623)||(13723051-13723106)
chr3 (568-623)||(4099737-4099792)
chr3 (631-670)||(5378234-5378273)
chr3 (569-623)||(2185446-2185500)
chr3 (571-620)||(23619432-23619481)
chr3 (631-670)||(5383570-5383609)
[»] chr1 (16 HSPs)
chr1 (568-623)||(2797004-2797059)
chr1 (568-623)||(14471543-14471598)
chr1 (568-623)||(14476906-14476961)
chr1 (568-623)||(23200390-23200445)
chr1 (569-623)||(2790575-2790629)
chr1 (569-623)||(23202759-23202813)
chr1 (569-623)||(39170182-39170236)
chr1 (572-623)||(42375365-42375416)
chr1 (568-623)||(21010395-21010450)
chr1 (631-670)||(14471763-14471802)
chr1 (631-670)||(14477126-14477165)
chr1 (631-670)||(39169978-39170017)
chr1 (569-622)||(394763-394816)
chr1 (176-238)||(22381250-22381312)
chr1 (571-622)||(14632655-14632706)
chr1 (569-604)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (569-623)||(20925392-20925446)
chr2 (480-554)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 20 - 670
Target Start/End: Original strand, 656255 - 656906
Alignment:
Q  20 ccagtaatgaaagtttttctggtagctttggtttcctattcatttccatttattgtcatcccaaatgcctgattggtcggttctatcgtcgcctaaactt 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656255 ccagtgatgaaagtttttctggtagctttggtttcctattcatttccatttattgtcatcccaaatgcctgattggtcggttctatcgtcgcctaaactt 656354  T
Q  120 ccttccgctttg-tcgctgtttctttgcccataaaattgttttgcacagcactcaataggtatgttgtcgacattgtatcatttttagttttctgccaac 218  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  656355 ccttccgctttgatcgctctttctttgcccataaa-ttgttttgcacagcactcaataggtatgttatcgacatcgtatcatttttagttttctgccaac 656453  T
Q  219 actgagactcaccattttttggtttctttcaatgttgggactccacgactgaatataatgtaattgtataaagccttcatgttagtaagtagttagtttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  656454 actgagactcaccattttttggtttctttcaatgttgggactccacggctgaatatggtgtaattgtataaagccttcatgttagtaagtagttagtttt 656553  T
Q  319 cctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgcaataattgaactcaaacttag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656554 cctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgcaataattgaactcaaacttag 656653  T
Q  419 tatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctattggatggagatccacataatttac 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  656654 tatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctgttggatggagatccacagaatttac 656753  T
Q  519 tctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaac 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  656754 tctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaatccactctctaactctcaaatgagaaac 656853  T
Q  619 tcaag-nnnnnnncaatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    |||||        ||||||||||||||||||||||||||||||||||||||||    
T  656854 tcaagttttttttcaatgaggtaagggatgatgtaagtgaccttgagcctatg 656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 623
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  564 caccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  572 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 559
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  477 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattaca 559  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 477 - 557
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  477 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaatta 557  Q
    ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 616
Target Start/End: Complemental strand, 8724822 - 8724775
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaa 616  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||    
T  8724822 tggctcaaaagccaagagagaatccactatctaactctcaaatgagaa 8724775  T

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Target: scaffold0015 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 570 - 623
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  570 ggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 621
Target Start/End: Complemental strand, 26243753 - 26243701
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactca 621  Q
    |||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  26243753 tggctcagaaactaagagagacctcattttctaactcttaaatgagaaactca 26243701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 670
Target Start/End: Original strand, 5378234 - 5378273
Alignment:
Q  631 caatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatg 5378273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  571 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactc 620  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 631 - 670
Target Start/End: Original strand, 5383570 - 5383609
Alignment:
Q  631 caatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatg 5383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  572 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  568 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 670
Target Start/End: Original strand, 14471763 - 14471802
Alignment:
Q  631 caatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14471802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 670
Target Start/End: Original strand, 14477126 - 14477165
Alignment:
Q  631 caatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14477165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 670
Target Start/End: Complemental strand, 39170017 - 39169978
Alignment:
Q  631 caatgaggtaagggatgatgtaagtgaccttgagcctatg 670  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatg 39169978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 622
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 622  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 22381250 - 22381312
Alignment:
Q  176 aggtatgttgtcgacattgtatcatttttagttttctgccaacactgagactcaccatttttt 238  Q
    |||||||||| ||| || ||||| |||||||||||||||||||||| | ||| ||||||||||    
T  22381250 aggtatgttgccgatatcgtatcgtttttagttttctgccaacactaatacttaccatttttt 22381312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 622
Target Start/End: Original strand, 14632655 - 14632706
Alignment:
Q  571 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 622  Q
    ||||| |||| |||||||||| |||||| ||||| |||||||||||||||||    
T  14632655 gctcataaacgaagagagaatccactctttaactttcaaatgagaaactcaa 14632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 604
Target Start/End: Complemental strand, 42377430 - 42377395
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaact 604  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42377430 tggctcagaaaccaagagagaatccactctctaact 42377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 623
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  569 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  480 ttaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaa 554  Q
    |||||| |||||  ||||||| ||||||||| | || |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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