View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_13 (Length: 422)
Name: NF15663_low_13
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 38782228 - 38782620
Alignment:
| Q |
15 |
aatataagaaccaaagaacaaatctcagccgtgcaattacattgataat---tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatc |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782228 |
aatataagaaccaaagaacaaatctcagccgtgcaattacactgataataattacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatc |
38782327 |
T |
|
| Q |
112 |
tcaaacaaatatacaatcgcctacactatataataacttacggtttgtgtactttatactnnnnnnnncgtttcataactctctctatatcttttggtag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
38782328 |
tcaaacaaatatacaatcgcctacactatataataacttacggtttgtgtacttcatactaaaaaaaacgtttcataactctctctatatcttttggtag |
38782427 |
T |
|
| Q |
212 |
attcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtagg |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38782428 |
attcttgatcttgtgcaatcatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcgaagatgaagggtttgtagg |
38782527 |
T |
|
| Q |
312 |
ttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaact |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782528 |
ttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaact |
38782620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 209 - 404
Target Start/End: Complemental strand, 38743810 - 38743615
Alignment:
| Q |
209 |
tagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgt |
308 |
Q |
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||||||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38743810 |
tagattcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagtagaagtatgcagcaaagaagaagggtttgt |
38743711 |
T |
|
| Q |
309 |
aggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaact |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38743710 |
aggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaact |
38743615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 213 - 404
Target Start/End: Original strand, 38788601 - 38788792
Alignment:
| Q |
213 |
ttcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtaggt |
312 |
Q |
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||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
38788601 |
ttcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggt |
38788700 |
T |
|
| Q |
313 |
tcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaact |
404 |
Q |
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|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38788701 |
tcgtactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaact |
38788792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 38744015 - 38743909
Alignment:
| Q |
15 |
aatataagaaccaaagaacaaatctcagccgtgcaattacattgataat-tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctc |
113 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| |||| ||| | | ||| |||||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
38744015 |
aatataacaaccaaagagaaaatctcaaccgttcaatcacaataacaatgtacaagttaccttctaaaaaaatctaaaccgtctaaaatatctgaatctc |
38743916 |
T |
|
| Q |
114 |
aaacaaa |
120 |
Q |
| |
|
||||||| |
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|
| T |
38743915 |
aaacaaa |
38743909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 38788446 - 38788530
Alignment:
| Q |
64 |
tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctcaaacaaatatacaatcgcctacactatataataac |
148 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||| | ||| |||||||||||||||||| |
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| T |
38788446 |
tacaagttaccttctaaaaaaatctaaacaatctaaaatatctgaatctaaaacaaataccccatcacctacactatataataac |
38788530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 395
Target Start/End: Complemental strand, 30963227 - 30963040
Alignment:
| Q |
208 |
gtagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttg |
307 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||| |
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|
| T |
30963227 |
gtagattcttgatctattgcaaccatgcgtccaccaatgaagagagtggattacaaggtaggagataaagtagaagtatgtagtaaagaagaagggtttg |
30963128 |
T |
|
| Q |
308 |
taggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacga |
395 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
30963127 |
taggttcatattttgaagccacaattgtttcatgccttgagagtggaaaatatgtgattcgttacaagaatcttcttaaagacgacga |
30963040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 30964978 - 30964920
Alignment:
| Q |
61 |
aattacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctcaaacaaa |
120 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
30964978 |
aattacaagttaccttctagaaaactctaaaccgtctaaaatat-ccaatctcaaacaaa |
30964920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 30897238 - 30897349
Alignment:
| Q |
208 |
gtagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttg |
307 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||| || |||||| ||||| || ||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
30897238 |
gtagattcttgacattgttccaccatgcgtccaccaatgaggagagtggattacaaaataggagataaagtagaagtatgcagtaaagaagaggggtttt |
30897337 |
T |
|
| Q |
308 |
taggttcatact |
319 |
Q |
| |
|
| ||||| |||| |
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|
| T |
30897338 |
tcggttcgtact |
30897349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 5963760 - 5963683
Alignment:
| Q |
268 |
ggagataaagtagaagtatgcagcaaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtctt |
345 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
5963760 |
ggagacaaagtggaagtatgcagcaaagaagaagggtttgtgggttcatactttgaagctacaattgtttcgtgtctt |
5963683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 220 - 404
Target Start/End: Original strand, 2914550 - 2914736
Alignment:
| Q |
220 |
tcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtaggttcatact |
319 |
Q |
| |
|
|||| ||||| ||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||| | |||||||| |||| |
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|
| T |
2914550 |
tcttttgcaaacatgcgtccgccaacaaagagagtcgattacaaggtaggagacaaagtagaagtatgcagcaaagaagatgggctcgtaggttcttact |
2914649 |
T |
|
| Q |
320 |
ttgaagctacaattgtttcatgtcttga---gagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaact |
404 |
Q |
| |
|
||||| ||||| ||| |||||||||| ||| || |||||| | | || |||||||| |||||||||||||| ||||| ||||| |
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|
| T |
2914650 |
atgaaggcacaatcgtt-catgtcttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaact |
2914736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 29626886 - 29626990
Alignment:
| Q |
280 |
gaagtatgcagcaaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatc |
379 |
Q |
| |
|
|||||||||| |||||||||||||||| || || |||||||| || | ||||||| |||| || |||| ||| |||||||| | ||||||||||| | |
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| T |
29626886 |
gaagtatgcatcaaagatgaagggttttggggctcgtactttgaggccaaaattgttgcatgcctcgagaatggagaatatgtggttcgttacaagaacc |
29626985 |
T |
|
| Q |
380 |
ttctt |
384 |
Q |
| |
|
||||| |
|
|
| T |
29626986 |
ttctt |
29626990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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