View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_15 (Length: 351)
Name: NF15663_low_15
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 11028522 - 11028197
Alignment:
| Q |
13 |
taggttctgttttggttttcgttgttcctgctttggtacatgcaggctcgttgtgttgctctgtatgtgcagaggtgttgtacattttgtgtcgtttcca |
112 |
Q |
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| T |
11028522 |
taggttctgttttggttttcgttgttcctgctttggcacatgcaggctcgttgtgttgctctgtatgtgcagaggtgttgtacattttttgtcgtttcca |
11028423 |
T |
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| Q |
113 |
gatataaattgtgctcgaatatgactttaatcaataatatttgctgttaaatgaaaatcttcctgaccacagaaatattattgtttgtaaatgggagaca |
212 |
Q |
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| T |
11028422 |
gatataaattgtgctcgaatatgactttaatcaataatatttgctgttaaatgagaatcttcctgaccacagaaatattattgtttgtaaatgggagaca |
11028323 |
T |
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| Q |
213 |
ctgtttaccttacaagccgggtttgtgaagttaaattaagttcaattcaaaagcctaaaagtaatgctacatagaaaccaatcccatagaataaagaaat |
312 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11028322 |
ctgtttaccttacaagccgagtttgtgaggttaaattaagttcaattcaaaagcgtaaaagtaatgctgcatagaaaccaatcccatagaataaagaaat |
11028223 |
T |
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| Q |
313 |
atagaaaccaatccctagaggtaact |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11028222 |
atagaaaccaatccctagaggtaact |
11028197 |
T |
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