View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_2 (Length: 634)
Name: NF15663_low_2
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 48 - 633
Target Start/End: Original strand, 33598227 - 33598816
Alignment:
| Q |
48 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
147 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
|
| Q |
148 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
247 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
|
| Q |
248 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
347 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
|
| Q |
348 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaataacagacttttcctgaaaagttag |
447 |
Q |
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| T |
33598525 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaataacagacttttcctgaaaagttag |
33598624 |
T |
|
| Q |
448 |
aatattggcttaaatctgatataattctcccactaaaaaattatacatcaaatcaatatgtacacgaacagtcaaatataattctgtgacttaatccatc |
547 |
Q |
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| T |
33598625 |
aatattggcttaaatctgatataattctcccactcaaaaattatacatcaaatcaatatgtacacaaacagtcaaatataattctgtgac----tcaatc |
33598720 |
T |
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| Q |
548 |
caacagctcaattaaaatccgtgtaa----------aatcgcacggtcggaaacacggacaacatttgcaacattagaattagcaacaaaaccaaa |
633 |
Q |
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| T |
33598721 |
caacagctcaattaaaatccgtgtaaaccactgtataatcgcacggtcggaaacacggacagcatttgcaacattagaattagcaacgaaaccaaa |
33598816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 47072109 - 47072525
Alignment:
| Q |
7 |
gagatgaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtac |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47072109 |
gagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtac |
47072208 |
T |
|
| Q |
107 |
tgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
206 |
Q |
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| T |
47072209 |
tgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
47072308 |
T |
|
| Q |
207 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47072309 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gca |
47072407 |
T |
|
| Q |
307 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttgg |
406 |
Q |
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| T |
47072408 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttgg |
47072507 |
T |
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| Q |
407 |
ctgtctctaattgtaata |
424 |
Q |
| |
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|||||||||||||||||| |
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| T |
47072508 |
ctgtctctaattgtaata |
47072525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
154 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
253 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| | |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
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| Q |
254 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
295 |
Q |
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||| ||||||||||||| ||| |||| |||||||||||||||| |
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| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 18232721 - 18232660
Alignment:
| Q |
344 |
aaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
405 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||| |
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| T |
18232721 |
aaaatgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttg |
18232660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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