View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15663_low_21 (Length: 279)

Name: NF15663_low_21
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15663_low_21
NF15663_low_21
[»] chr5 (13 HSPs)
chr5 (1-267)||(39168800-39169069)
chr5 (1-267)||(39879768-39880034)
chr5 (1-259)||(40418245-40418497)
chr5 (1-267)||(39726372-39726638)
chr5 (1-267)||(38987659-38987919)
chr5 (131-259)||(39399821-39399949)
chr5 (137-267)||(3299487-3299620)
chr5 (137-267)||(3392380-3392513)
chr5 (143-267)||(1163693-1163817)
chr5 (143-267)||(1849919-1850046)
chr5 (139-245)||(40102209-40102315)
chr5 (1-93)||(3299640-3299735)
chr5 (1-93)||(3392533-3392628)
[»] chr4 (2 HSPs)
chr4 (1-267)||(25912159-25912422)
chr4 (2-209)||(44444642-44444838)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39169069 - 39168800
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaa---ttctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgcc 97  Q
    |||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169069 gataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgcc 39168970  T
Q  98 attgatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttg 197  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168969 attgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttg 39168870  T
Q  198 atttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168869 atttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 39168800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39880034 - 39879768
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccatt 100  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| | |||||||| ||||||||||||| |  |||    
T  39880034 gataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttatt 39879935  T
Q  101 gatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatt 200  Q
    | | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||    
T  39879934 ggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatt 39879835  T
Q  201 tgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  39879834 tgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40418497 - 40418245
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccatt 100  Q
    |||||||||||||||||||||| | || | |||||| ||||||||| |||||  |||||||| ||||||| |||||||| ||||||||||||| |  |||    
T  40418497 gataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggttgatatt 40418398  T
Q  101 gatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatt 200  Q
    ||| ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||    
T  40418397 gatgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatt 40418304  T
Q  201 tgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaa 259  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  40418303 tgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaa 40418245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39726638 - 39726372
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccatt 100  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| | |||||||| ||||||||||||| |  |||    
T  39726638 gataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttatt 39726539  T
Q  101 gatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatt 200  Q
    | | ||||||| |||||||||| || ||  ||||||||||| ||||||||||||||||| |||||||| |||||| ||| |||| ||||||||  |||||    
T  39726538 ggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatt 39726439  T
Q  201 tgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  39726438 tgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 39726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 38987919 - 38987659
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccatt 100  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| | |||||||| ||||||||||||| |  |||    
T  38987919 gataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttatt 38987820  T
Q  101 gatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatt 200  Q
    | | ||||||| |||||||||| ||      |||||||||| ||||||||||||||||| |||||||| |||||| ||| |||| ||||||||  |||||    
T  38987819 ggtgttggtgtcagctcctccttct------cctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatt 38987726  T
Q  201 tgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  38987725 tgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatt 38987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 39399949 - 39399821
Alignment:
Q  131 tcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatct 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |    
T  39399949 tcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaattt 39399850  T
Q  231 tccacacgagcaaccacggcatcagctaa 259  Q
    |||||||||||||||||||||||||||||    
T  39399849 tccacacgagcaaccacggcatcagctaa 39399821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 3299620 - 3299487
Alignment:
Q  137 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 233  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  234 acacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||| |||||||||||| |||||||    
T  3299520 acacgagcaaccatggcatcagctaaacgatatt 3299487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 3392513 - 3392380
Alignment:
Q  137 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 233  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  234 acacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||| |||||||||||| |||||||    
T  3392413 acacgagcaaccatggcatcagctaaacgatatt 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 267
Target Start/End: Original strand, 1163693 - 1163817
Alignment:
Q  143 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 241  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  1163693 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 1163791  T
Q  242 aaccacggcatcagctaaccgatatt 267  Q
    ||| | ||||| |||||| |||||||    
T  1163792 aactatggcattagctaaacgatatt 1163817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 1850046 - 1849919
Alignment:
Q  143 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttccacacga 239  Q
    ||||||||||||||||| |||||| | |||||||||| |||  ||||||||  |||||||||||||||||   | ||||||||||| ||||| |||||||    
T  1850046 gtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacga 1849947  T
Q  240 gcaaccacggcatcagctaaccgatatt 267  Q
    ||||| | ||||| |||||| |||||||    
T  1849946 gcaactatggcattagctaaacgatatt 1849919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 40102209 - 40102315
Alignment:
Q  139 acaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacg 238  Q
    ||||||||||||||| ||||| ||||||  |||| |||| || ||| |||||||| ||||| | |||  | |||||||| ||||||||||||| ||||||    
T  40102209 acaagtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacg 40102308  T
Q  239 agcaacc 245  Q
    |||||||    
T  40102309 agcaacc 40102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3299735 - 3299640
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttggtaatcaaaattgcagcaggaaggt 93  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| | ||||| |||||||| |||||||||||||    
T  3299735 gataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggt 3299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3392628 - 3392533
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttggtaatcaaaattgcagcaggaaggt 93  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| | ||||| |||||||| |||||||||||||    
T  3392628 gataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggt 3392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 25912159 - 25912422
Alignment:
Q  1 gataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccatt 100  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||| |||||  |||||||| ||||||| |||||||| |||||| |||||| |  |||    
T  25912159 gataatcagattcccacttatcctgaacagcaacaactctaccattctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggttgttatt 25912258  T
Q  101 gatattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatt 200  Q
    | | ||||||||||||||   |||||||  ||||| ||||| ||||||||||||||||| |||| ||| ||||| |||| |||| ||||||||  |||||    
T  25912259 ggtgttggtgttagctcc---tccttctcctcctctagacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatt 25912355  T
Q  201 tgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatatt 267  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||||||    
T  25912356 tgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgatatt 25912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 44444642 - 44444838
Alignment:
Q  2 ataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggtaatcaaaattgcagcaggaaggtcgccattg 101  Q
    ||||||||||||| | ||||||| ||||||||| ||     |||| |||||||| |||||| | ||||||||||||||||||||| ||||||||||| ||    
T  44444642 ataatcagattccaatttatcctgaacaacaactatgt---cattctcttcatcgtaactagtattggtaatcaaaattgcagcacgaaggtcgccaatg 44444738  T
Q  102 atattggtgttagctcctcctccttcttttcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgattt 201  Q
     | ||| ||||||||| ||||| | ||   |||  ||     ||||||||||||||||||||||| | |||||||||| |||| |||||||| |||||||    
T  44444739 gtgttgatgttagctcttcctcttact---cctatag-----tcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgattt 44444830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University