View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_22 (Length: 260)
Name: NF15663_low_22
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30542173 - 30541914
Alignment:
| Q |
1 |
ggtggaaaaagtttatggatgaacacactattacaaactattgcttttccaattcttttcataccacnnnnnnnatttcctcaagcaaaaaacacttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30542173 |
ggtggaaaaagtttatggatgaacacactattacaaactattgcttttccaattcttttcataccactttttttatttcctcaagcaaaaaacacttttg |
30542074 |
T |
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| Q |
101 |
aaaccactatgcactcttctattcacactcttatcataatttacttctctttaggtattctattagcttgtgattatttcatgtactcaataggactttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542073 |
aaaccactatgcactcttctattcacactcttatcataatttacttctctttaggtattctattagcttgtgattatttcatgtactcaataggactttt |
30541974 |
T |
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| Q |
201 |
atatcttcctgtttcaacctattcgcttatttgtgcatcacaacttgctttcaatgcttt |
260 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30541973 |
atatcttcctgtttcaacctattcacttatttgtgcatcacaacttgctttcaatgcttt |
30541914 |
T |
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