View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_28 (Length: 236)
Name: NF15663_low_28
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 7435164 - 7435366
Alignment:
| Q |
18 |
atgaagaatatgtcaccatttttccctgcttcgatgggatacttaacatgaggcaacaacccaacaatgtagagcttagtccacgattcttttacaccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7435164 |
atgaagaatatgtcaccatttttccctgcttcgatgggatacttaacatgaggcaacgacccaacaatgaagagcttagtccacgattcttttacaccaa |
7435263 |
T |
|
| Q |
118 |
tttcacctaaaattgatacgtgaagggtattcgtctccccactatatgatatcaaaccaatggaccgatttaacatcaccaactgcctcttcaccaatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7435264 |
tttcacctaaaattgatacgtgaagggtattcgtctccccactatatgatatcaaaccaatggaccgatttaacatcaccaactgcctcttcaccaatct |
7435363 |
T |
|
| Q |
218 |
aat |
220 |
Q |
| |
|
||| |
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|
| T |
7435364 |
aat |
7435366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 7523993 - 7524195
Alignment:
| Q |
18 |
atgaagaatatgtcaccatttttccctgcttcgatgggatacttaacatgaggcaacaacccaacaatgtagagcttagtccacgattcttttacaccaa |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
7523993 |
atgaagaatatatcaccatttttccctgcttcgatgggatacttaacatgaggcaatggcccaacaatgaagagcttagtccaagattcttttacaccaa |
7524092 |
T |
|
| Q |
118 |
tttcacctaaaattgatacgtgaagggtattcgtctccccactatatgatatcaaaccaatggaccgatttaacatcaccaactgcctcttcaccaatct |
217 |
Q |
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||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7524093 |
tttcacctaaaatcgatacgtgaagagtattcgtctctccgctatatgatatcaaaccaatggacccatttaacatcaccaactgcctcttcaccaatct |
7524192 |
T |
|
| Q |
218 |
aat |
220 |
Q |
| |
|
||| |
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|
| T |
7524193 |
aat |
7524195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 7520680 - 7520491
Alignment:
| Q |
18 |
atgaagaatatgtcaccatttttccctgcttcgatgggatacttaacatgaggcaacaacccaacaatgtagagcttagtccacgattcttttacaccaa |
117 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| || ||||||| |||||||||||| | || |||||| |||| ||||||| |||||||||| |||| |
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| T |
7520680 |
atgaagaatatgtcactattattccctgcttcaattggatactcaacatgaggcaatgatccgacaatgaagagtttagtccttaattcttttacgccaa |
7520581 |
T |
|
| Q |
118 |
tttcacctaaaa-ttgatacgtgaagggtattcgtctccccactatatgatatcaaaccaatggaccgatttaacatcaccaactgcctc |
206 |
Q |
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||||||| |||| |||||| |||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
7520580 |
tttcaccaaaaaattgatatgtgaagagtattcatctccctactatatgatatcaaaccaatggacccatttaacatcaccaactacctc |
7520491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 44918496 - 44918549
Alignment:
| Q |
88 |
agagcttagtccacgattcttttacaccaatttcacctaaaattgatacgtgaa |
141 |
Q |
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|||| ||||||||||||||||| |||||| ||||||||||||||||| ||||| |
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|
| T |
44918496 |
agagtttagtccacgattctttcccaccaagttcacctaaaattgatatgtgaa |
44918549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 13281132 - 13281091
Alignment:
| Q |
94 |
tagtccacgattcttttacaccaatttcacctaaaattgata |
135 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
13281132 |
tagtccatgattctttaacaccaatttcacccaaaattgata |
13281091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7488773 - 7488817
Alignment:
| Q |
97 |
tccacgattcttttacaccaatttcacctaaaattgatacgtgaa |
141 |
Q |
| |
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|||| |||||||| |||||||||||||| |||||||||| ||||| |
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|
| T |
7488773 |
tccatgattctttcacaccaatttcacccaaaattgatatgtgaa |
7488817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 5442445 - 5442390
Alignment:
| Q |
80 |
aacaatgtagagcttagtccacgattcttttacaccaatttcacctaaaattgata |
135 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||||||||||||||| |||| |
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|
| T |
5442445 |
aacaatgtaaagtttagtccatgattctttcacaccaatttcacctaaaatagata |
5442390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 5451455 - 5451400
Alignment:
| Q |
80 |
aacaatgtagagcttagtccacgattcttttacaccaatttcacctaaaattgata |
135 |
Q |
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|
||||||||| || |||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
5451455 |
aacaatgtaaagtttagtccatgattctttcacaccaatttcacctaaaatagata |
5451400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 29131384 - 29131321
Alignment:
| Q |
78 |
ccaacaatgtagagcttagtccacgattcttttacaccaatttcacctaaaattgatacgtgaa |
141 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||| |||| |||||| |||||||||| ||||| |
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| T |
29131384 |
ccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaa |
29131321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 41996222 - 41996276
Alignment:
| Q |
77 |
cccaacaatgtagagcttagtccacgattcttttacaccaatttcacctaaaatt |
131 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||| ||| |||||| |||||| |
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|
| T |
41996222 |
cccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaatt |
41996276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 42777851 - 42777799
Alignment:
| Q |
81 |
acaatgtagagcttagtccacgattcttttacaccaatttcacctaaaattga |
133 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||| | ||| ||||||||||| |
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|
| T |
42777851 |
acaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaattga |
42777799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 42840528 - 42840568
Alignment:
| Q |
93 |
ttagtccacgattcttttacaccaatttcacctaaaattga |
133 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||||| |
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|
| T |
42840528 |
ttagtccatgattcttttacaccaagttcacccaaaattga |
42840568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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