View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_3 (Length: 633)
Name: NF15663_low_3
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 12 - 615
Target Start/End: Complemental strand, 115213 - 114596
Alignment:
| Q |
12 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
111 |
Q |
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| T |
115213 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
115114 |
T |
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| Q |
112 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgagg |
211 |
Q |
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| T |
115113 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgagg |
115014 |
T |
|
| Q |
212 |
cagttagttggattgcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccattt-----cattagtttaattcatcacaat |
306 |
Q |
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| T |
115013 |
cagttagttggatttcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatttcattagtttaattcatcacaat |
114914 |
T |
|
| Q |
307 |
catcctctaaactcttctacgatttaggttcatttttaattttataataacacaacaaacaaatatcttttctgaaaacataaatttcataagctcaaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114913 |
catcctctaaactcttctacgatttaggttcatttttaattttataataacacaacaaacaaatatcttttctgaaaacataaatttcataagctcaaaa |
114814 |
T |
|
| Q |
407 |
agttgaaatagcaacataaaaagaaaacataatttgcatctctctagtattagagacaccaagc---aagcataa------agacgtacgtaccttttgc |
497 |
Q |
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| T |
114813 |
agttgaaatagcaacataaaaagaaaacataatttgtatctctctagtattagagacaccaagcataaagactaatttcatatacgtacgtaccttttgc |
114714 |
T |
|
| Q |
498 |
ctcgtttggaatgatcagatctcgaatgatgttgttgtagaaaggagggttgtgaatctacaaccttgatttctggagaatgttgaagaatagttttatt |
597 |
Q |
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| T |
114713 |
ctcgtttggaatgatcagatctcgaatgatgttgttgtagaaaggagggttgtgaatctacaaccttcctttctggagaatgttgaagaatagttttatt |
114614 |
T |
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| Q |
598 |
atttaagtatgctaagga |
615 |
Q |
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| T |
114613 |
atttaagtatgctaagga |
114596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 36329904 - 36330092
Alignment:
| Q |
12 |
aaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtg |
111 |
Q |
| |
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|||||||| |||||| ||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||| ||||||| |||||||| |||| |
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| T |
36329904 |
aaaattaagttctaacgaatctaacaagttctatctaattgttgtgagataattcatatttaggaataattac------ttgtaattcaagtaagtagtg |
36329997 |
T |
|
| Q |
112 |
aatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgag |
210 |
Q |
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||||||||| |||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
36329998 |
aatcgattcatgaattgatttatattgtgcaaataactgttttagttagt----tagtgacttgttgaacaagtcagaggagttacttagtttgttgag |
36330092 |
T |
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