View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15663_low_5 (Length: 604)
Name: NF15663_low_5
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 91 - 592
Target Start/End: Original strand, 42882341 - 42882865
Alignment:
| Q |
91 |
aacagaaatgtggaggatttacagtgaaagttgagcatgactctttgagtcattttaatatagtggatgctgattttggagacatctatgttagatttga |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42882341 |
aacagaaatgtggaggatttacagtgaaagttgagcatgactctttgagtcattttaatatagtggatgctgattttggagacatctatgttagatttga |
42882440 |
T |
|
| Q |
191 |
agaagtgctcaattccatcataggtgagtgttcttattttcaaaataaattgccaagtcggatgaagttatttagtagaggggtgtacattacattacat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42882441 |
agaagtgctcaattccatcataggtgagtgttcttattttcaaaataaattgccaagtcggatgaagttatttagtagaggggtgtacgttacattacat |
42882540 |
T |
|
| Q |
291 |
gatatttaannnnnnngacgcaatgttaagctacatgatgaatatcaattaaactgtannnnnnnctattttgcattcctgatcgaagtggg-------- |
382 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
42882541 |
gatatttaatttttttgacgcaatgttaagctacatgatgaatatcaattaaactgtatttttttctattttgcattcatgatcgaagtgggttaactac |
42882640 |
T |
|
| Q |
383 |
-------ttgtaggc-------ttattgatgtgtattggtgcttaggttgggtttgatggtgtgttctctaatgaggttggtgctcatttcatccaattt |
468 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42882641 |
acttgttttgtaggcgtataatttattgatgtgtattggtgctgaggttgggtttgatggtgtgttctctaatgaggttgttgctcatttcatccaattt |
42882740 |
T |
|
| Q |
469 |
ataaggatgactgactagagggaagtgggcaaagtagggttagacatttaatttggagtgttggtgtggctctttcg-nnnnnnnaagaaatcaaattat |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42882741 |
ataaggatgactgactagagggaagtgggcaaagtagggttagacatttaatttggagtgttggtgtggctctttcgttttttttaagaaatcaaattat |
42882840 |
T |
|
| Q |
568 |
attcaatgattatgatggtacatat |
592 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42882841 |
attcaatgattatgatggtacatat |
42882865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University