View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_7 (Length: 512)
Name: NF15663_low_7
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 25 - 503
Target Start/End: Complemental strand, 2796156 - 2795678
Alignment:
| Q |
25 |
aacactcttgatttcttactttacacttcactcactttagaggaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctacta |
124 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2796156 |
aacactcttgatttcttgctttacactttactcactttagaggaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctatta |
2796057 |
T |
|
| Q |
125 |
tcagaaaagaaaatatattgaatgactcgttgcaaaattgtttataaaattgttacaagtgaaaatggacataatgtagaaagacttgatggcaaaaaag |
224 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796056 |
tcagaaaagaaaatatattgaatgactccttgcggaattgtttataaaattgttataagtgaaaatggacataatgtagaaagacttgatggcaaaaaag |
2795957 |
T |
|
| Q |
225 |
agattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaacc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795956 |
agattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaacc |
2795857 |
T |
|
| Q |
325 |
ttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795856 |
ttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttat |
2795757 |
T |
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| Q |
425 |
ccatattagaaccatattttttaaaattttgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
503 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795756 |
ccatattagaaccatatttttttaaattttgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
2795678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 38603034 - 38603002
Alignment:
| Q |
36 |
tttcttactttacacttcactcactttagagga |
68 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
38603034 |
tttcttgctttacacttcactcactttagagga |
38603002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
| Q |
225 |
agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||||| |||| ||||| || | ||| | |
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| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
|
| Q |
324 |
cttcggattgatggagctcgtgccattggggaagc |
358 |
Q |
| |
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||||||| |||||||||||||||||||| |||||| |
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| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagc |
48670950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 29391189 - 29391157
Alignment:
| Q |
36 |
tttcttactttacacttcactcactttagagga |
68 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
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|
| T |
29391189 |
tttcttactttacactttactcactttagagga |
29391157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
325 |
ttcggattgatggagctcgtgccattggggaagc |
358 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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