View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_8 (Length: 486)
Name: NF15663_low_8
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_8 |
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| [»] chr5 (12 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 145 - 486
Target Start/End: Complemental strand, 39169387 - 39169053
Alignment:
| Q |
145 |
aaattgcaaatttaaacaacctatgtcttgttcttgttattggaaagtnnnnnnncataaccatgaaacagaaattgcaaattgaaagaacctaatataa |
244 |
Q |
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| T |
39169387 |
aaattgcaaatttaaaccacctatgtcttgttcttgttattggaaagtaaaaaaacataaacatgaaacagaaattgcaaattgaaagaacctaatataa |
39169288 |
T |
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| Q |
245 |
atgaaaagcatcttcttgttcttattattattggaatnnnnnnnnnnncatcaacgtaggttagattttttaatcttgcaactcctccaatggaacagag |
344 |
Q |
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| T |
39169287 |
atgaaaagcatcttcttgttcttattattattggaataaaaaaaaa---atcaacataagttatattttttaatcttgcaactcctccaatggaac---- |
39169195 |
T |
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| Q |
345 |
agagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtct |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39169194 |
ggagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtct |
39169095 |
T |
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| Q |
445 |
tgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
39169094 |
tgttgtagatcttttaaaaagagttgataatcagattcccac |
39169053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 3299767 - 3299719
Alignment:
| Q |
438 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
3299767 |
agtgtcttgttgtagatcttttaagaagagttgataatcagattcccac |
3299719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 3392660 - 3392612
Alignment:
| Q |
438 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
3392660 |
agtgtcttgttgtagatcttttaagaagagttgataatcagattcccac |
3392612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 486
Target Start/End: Complemental strand, 39400144 - 39400048
Alignment:
| Q |
390 |
gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
39400144 |
gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccac |
39400048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 1163564 - 1163609
Alignment:
| Q |
441 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
1163564 |
gtcttgttgtagatcttttaagaagagttgataaccagattcccac |
1163609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 1850175 - 1850130
Alignment:
| Q |
441 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
1850175 |
gtcttgttgtaaatcttttaagaagagttgataatcagattcccac |
1850130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 40418529 - 40418481
Alignment:
| Q |
438 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
40418529 |
agtgtcttgttgtagatcattgaagaagagttgataatcagattcccac |
40418481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 40418781 - 40418724
Alignment:
| Q |
200 |
cataaccatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatcttc |
259 |
Q |
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| T |
40418781 |
cataaacatgaaacaaaaattgcaaatagaaagaaccta--ataaatgaaaagcatcttc |
40418724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 38987948 - 38987903
Alignment:
| Q |
441 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
38987948 |
gtcttgttgtagatcattgaagaagagttgataatcagattcccac |
38987903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 38988203 - 38988162
Alignment:
| Q |
200 |
cataaccatgaaacagaaattgcaaattgaaagaacctaata |
241 |
Q |
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| T |
38988203 |
cataaacatgaaacagaaattgcaaatagaaagaacctaata |
38988162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 39726667 - 39726622
Alignment:
| Q |
441 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
39726667 |
gtcttgttgtagatcattgaagaagagttgataatcagattcccac |
39726622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 39880066 - 39880018
Alignment:
| Q |
438 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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| T |
39880066 |
agtgttttgttgtagatcattgaagaagagttgataatcagattcccac |
39880018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 25912130 - 25912175
Alignment:
| Q |
441 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
486 |
Q |
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|||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
25912130 |
gtcttgctgtagataatttaagaagagttgataatcagattcccac |
25912175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 51106392 - 51106433
Alignment:
| Q |
99 |
tcgagagttatgatttggattattgatctcgaatcatcttat |
140 |
Q |
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| T |
51106392 |
tcgagagttatggtttggaatattgatctcgagtcatcttat |
51106433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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