View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15663_low_9 (Length: 463)
Name: NF15663_low_9
Description: NF15663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15663_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 8210762 - 8210317
Alignment:
| Q |
19 |
acccttgagagtctagatgaagaagagagagtagtagtgataaatgtgatacacaaagatggaatggagattgtgaatggtgttagatgagtgctggnnn |
118 |
Q |
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| T |
8210762 |
acccttgagaggatagatgaagaagagagagtagtagtgataaatgtgatacacagagatggaatggagattctgaatggtgttagatgagtgctggttt |
8210663 |
T |
|
| Q |
119 |
nnnn-ctt--tctaagggcttcaaaaattacaacataactcattatcttcttcatttaaactcttctccatttgtataagaacgaaattagggatggtaa |
215 |
Q |
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| T |
8210662 |
tttttcttcttctaagggcttcaaaaattacaacataactcactatcttcttcatttaaactcttctccatttgtataagaacgaaattagagatggtaa |
8210563 |
T |
|
| Q |
216 |
aataggtcgagtctatcgaaccaatccgtttaatatgttattttaaataaattgagttgatgttttaaactcaatctcttaagttggttcactctaacta |
315 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8210562 |
aataggtcgagtctatcgaaccaatcagtttaatctgttattttaaataaaccgagttgatgttttaaactcaatctcttaagttggttcactctaatta |
8210463 |
T |
|
| Q |
316 |
gatagaaaacgcatggtggaatcagtatggctggactagcatgcaagctagtataaaaaataatcatttttatatggnnnnnnnat-----agaaataat |
410 |
Q |
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||||||||| ||| ||||||| ||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
8210462 |
gatagaaaaggcagggtggaaatagtgtggctggaccagcctgcaagctagtgtaaaaaataatcatttttatatatattttttttttttgagaaataat |
8210363 |
T |
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| Q |
411 |
atgaatcacaacatcaaatcatttaatcattagcccacctttgcta |
456 |
Q |
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| T |
8210362 |
atgaatcacaacatcaaatcatttaatcattagcccacctttgcta |
8210317 |
T |
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