View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_high_17 (Length: 261)
Name: NF15664_high_17
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_high_17 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8403723 - 8403481
Alignment:
| Q |
1 |
ataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtcta |
100 |
Q |
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| T |
8403723 |
ataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtcta |
8403624 |
T |
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| Q |
101 |
tcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatataga |
200 |
Q |
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| T |
8403623 |
tcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttgatttcttgtttgattcattctttacatataga |
8403524 |
T |
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| Q |
201 |
ttctttcgattattttgaaaataaataaagatgttgaacgttt |
243 |
Q |
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| T |
8403523 |
ttctttcgattattttgaaaataaataaagatgttgaacgttt |
8403481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8429578 - 8429362
Alignment:
| Q |
1 |
ataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtcta |
100 |
Q |
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||||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||| | |||| |
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| T |
8429578 |
ataaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctgctctcta |
8429479 |
T |
|
| Q |
101 |
tcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatataga |
200 |
Q |
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| T |
8429478 |
tcggatggaaggacgtgagatagatgaattcgccaacaaactcttctgaaaacaacatttt--------ttttttgtttgattcattcttttcatacgaa |
8429387 |
T |
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| Q |
201 |
ttctttcgattattttgaaaataaa |
225 |
Q |
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| T |
8429386 |
ttctttcaattattttgaaaataaa |
8429362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 8376209 - 8376297
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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| T |
8376209 |
aaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctcaaaatc |
8376297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 8395895 - 8395983
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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| T |
8395895 |
aaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatc |
8395983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8405677 - 8405589
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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| T |
8405677 |
aaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatcaaaatc |
8405589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 8430948 - 8430889
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
62 |
Q |
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| T |
8430948 |
aaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta |
8430889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8411797 - 8411709
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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| T |
8411797 |
aaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatc |
8411709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8433895 - 8433807
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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|||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || |||||||||||||| |
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| T |
8433895 |
aaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatc |
8433807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 41 - 129
Alignment:
| Q |
3 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
91 |
Q |
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|||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| |||||||| |
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| T |
41 |
aaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatc |
129 |
T |
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