View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_high_24 (Length: 234)
Name: NF15664_high_24
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 46360942 - 46361157
Alignment:
| Q |
11 |
cacagattatcagttttaatttatgaaaattttgcaggctgagaaaatcttacaaaattacagatcttagaccatctagctatagggaggtctaatgcgc |
110 |
Q |
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| T |
46360942 |
cacagattatcagttttaatttatgaaaattttgcaggctgagaaaatcttacaaaattacagatcttagaccatctagctatagggaggtctaatgcgt |
46361041 |
T |
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| Q |
111 |
agtgttccccctgtctctgaaggacaagaatatattatggaaacttggaaagcaagtgagaaaataaaactacataatgtaatcgtatttagagaaatga |
210 |
Q |
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| T |
46361042 |
agtgttccccctgtctctgaaggacaagaatatatta--------tggaaagcaagtgagaaaataaaactacataatgtaatcgtatttagagaaatga |
46361133 |
T |
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| Q |
211 |
aaaatgaagaacaaccactgctgg |
234 |
Q |
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| T |
46361134 |
aaaatgaagaacaatcactgctgg |
46361157 |
T |
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 7164758 - 7164834
Alignment:
| Q |
11 |
cacagattatcagttttaatttatgaaaattttgcaggctgagaaaatcttacaaaattacagatcttagaccatcta |
88 |
Q |
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| T |
7164758 |
cacagatcatcagttttaatttatgaaaattttgcaggctgagaaaaactta-acacttaaagatcttaggccatcta |
7164834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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