View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_high_29 (Length: 206)

Name: NF15664_high_29
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_high_29
NF15664_high_29
[»] chr2 (2 HSPs)
chr2 (20-191)||(4956734-4956905)
chr2 (36-72)||(45268324-45268360)
[»] chr8 (1 HSPs)
chr8 (20-191)||(35827997-35828168)
[»] chr7 (2 HSPs)
chr7 (60-164)||(40354003-40354107)
chr7 (60-92)||(43305814-43305846)
[»] chr5 (1 HSPs)
chr5 (43-95)||(31892668-31892720)
[»] chr4 (1 HSPs)
chr4 (60-92)||(44721141-44721173)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 4956734 - 4956905
Alignment:
Q  20 cataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956734 cataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcact 4956833  T
Q  120 caaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttcaggcttaagatccctatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956834 caaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttcaggcttaagatccctatg 4956905  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 45268324 - 45268360
Alignment:
Q  36 caaaacctcaggtgcaacataagcaggagtaccacaa 72  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  45268324 caaaacttcaggtgcaacataagcaggagtcccacaa 45268360  T

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Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 35828168 - 35827997
Alignment:
Q  20 cataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcact 119  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||| ||| || ||||||||    
T  35828168 cataacctttcctagacaaaacctcaggagcaacataagcaggtgtaccacaaaaagtatgaaacaacccatcttgcttaatttcatccgacacagcact 35828069  T
Q  120 caaaccaaaatcagacactttcaaattaccattctcatcaagcaacaaattttcaggcttaagatccctatg 191  Q
     | ||||||||| || ||||| |  ||||| || |||||||||||||||||||||||||| ||||| |||||    
T  35828068 aagaccaaaatctgaaactttaaggttacctttttcatcaagcaacaaattttcaggctttagatctctatg 35827997  T

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Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 40354003 - 40354107
Alignment:
Q  60 aggagtaccacaaaaagtatgaaacaaaccatcttgtctaatttgatcagaaacagcactcaaaccaaaatcagacactttcaaattaccattctcatca 159  Q
    |||||||| |||||||||| |||||| |||||||||||||||||||| |||| ||  ||| |||||||||||||| | ||||||||||| ||| ||||||    
T  40354003 aggagtacaacaaaaagtaagaaacagaccatcttgtctaatttgatgagaagcaatacttaaaccaaaatcagaaagtttcaaattacaattatcatca 40354102  T
Q  160 agcaa 164  Q
    |||||    
T  40354103 agcaa 40354107  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 43305846 - 43305814
Alignment:
Q  60 aggagtaccacaaaaagtatgaaacaaaccatc 92  Q
    ||||||||||||||||||| |||||||||||||    
T  43305846 aggagtaccacaaaaagtaagaaacaaaccatc 43305814  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 31892720 - 31892668
Alignment:
Q  43 tcaggtgcaacataagcaggagtaccacaaaaagtatgaaacaaaccatcttg 95  Q
    ||||| ||||||||||||||||| ||||||   ||||| ||||||||||||||    
T  31892720 tcaggagcaacataagcaggagttccacaagttgtatgcaacaaaccatcttg 31892668  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 44721141 - 44721173
Alignment:
Q  60 aggagtaccacaaaaagtatgaaacaaaccatc 92  Q
    ||||||||||||||||||| |||||||||||||    
T  44721141 aggagtaccacaaaaagtaagaaacaaaccatc 44721173  T

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