View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15664_high_3 (Length: 519)
Name: NF15664_high_3
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 348 - 502
Target Start/End: Original strand, 25771762 - 25771916
Alignment:
| Q |
348 |
attgaaataacacctggagtagaaactcctaaaacattaatgtggttagtggggtggaggagagaaggggggttgatgaggaaatgtcctcagctcatat |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25771762 |
attgaaataacacctggagtagaaactcctaaaacattaatgtggttagtggggtgtgacagagaaggggggttgaagaggaaatgtcctcagctcatat |
25771861 |
T |
|
| Q |
448 |
tttggaaatgaatctttttactattttattgagacaattgaagcttgaggatgtt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25771862 |
tttggaaatgaatctttttactattttattgagacaattggagcttgaggatgtt |
25771916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25771607 - 25771693
Alignment:
| Q |
1 |
atttgcattgcaaaacttgaatttaagattgtaaactggcctcaatcacataaatgtgtcttctcaattccaatagaaaactcaatt |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25771607 |
atttgcattgcaaaacttgaatttaagattgtaaactggcctcaatcacatgaatgtgtcttctcaattccaatagaaaactcaatt |
25771693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 25745062 - 25745236
Alignment:
| Q |
131 |
attagaaaatgtaatttctctgtttcgccaacatcaccttcagatgatatgatctaacgtcccgaatttgattagtctaatgcacatatgacctcagatt |
230 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||| ||||||||| |||||||||| ||| |||||||||||| |||| || ||| | |||||||| |
|
|
| T |
25745062 |
attagaaaatctaatttatctgtttcgcctacatcatcttcagatgctatgatctaatgtctataatttgattagtttaattcatgtataaactcagatt |
25745161 |
T |
|
| Q |
231 |
ttaaacacactctattatacataaaaagagcattacaaaattataaatgaaacatgatgtctctttaatttattt |
305 |
Q |
| |
|
||||| ||| || ||||||||||||||| |||| |||| |||||||| | ||| | |||||| ||||| ||||| |
|
|
| T |
25745162 |
ataaactcaccctgttatacataaaaagaacattgcaaatttataaattagacagggtgtctccttaatctattt |
25745236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 25731171 - 25731238
Alignment:
| Q |
245 |
ttatacataaaaagagcattacaaaattataaatgaaacatgatgtctctttaatttattttattttt |
312 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| | | | | |||||||||| |||||||||||||| |
|
|
| T |
25731171 |
ttatacataaaaagaacattataaaattataaattagataaggtgtctctttagtttattttattttt |
25731238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University