View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_high_5 (Length: 453)

Name: NF15664_high_5
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_high_5
NF15664_high_5
[»] chr2 (6 HSPs)
chr2 (18-313)||(13016919-13017215)
chr2 (37-401)||(11272274-11272637)
chr2 (311-435)||(13015990-13016118)
chr2 (31-392)||(1479434-1479794)
chr2 (165-235)||(15316524-15316594)
chr2 (172-243)||(30995318-30995389)
[»] chr6 (5 HSPs)
chr6 (34-388)||(1034039-1034394)
chr6 (31-353)||(2920962-2921283)
chr6 (263-353)||(18246572-18246662)
chr6 (325-392)||(32548941-32549008)
chr6 (167-201)||(8407533-8407567)
[»] chr8 (7 HSPs)
chr8 (30-401)||(9936132-9936506)
chr8 (31-362)||(8273575-8273904)
chr8 (31-379)||(37269843-37270190)
chr8 (31-379)||(42940977-42941325)
chr8 (165-363)||(30503004-30503202)
chr8 (277-379)||(36404064-36404166)
chr8 (177-236)||(37484904-37484963)
[»] chr5 (2 HSPs)
chr5 (37-362)||(36988772-36989097)
chr5 (49-105)||(40296232-40296288)
[»] chr7 (2 HSPs)
chr7 (34-387)||(42460093-42460445)
chr7 (263-353)||(31234771-31234861)
[»] chr1 (5 HSPs)
chr1 (197-382)||(32774124-32774309)
chr1 (31-146)||(32774336-32774451)
chr1 (37-143)||(4641000-4641106)
chr1 (172-236)||(19586677-19586741)
chr1 (164-236)||(24722559-24722631)
[»] chr4 (7 HSPs)
chr4 (37-379)||(2281985-2282328)
chr4 (263-353)||(16989575-16989665)
chr4 (165-239)||(4913493-4913567)
chr4 (165-239)||(43441460-43441534)
chr4 (165-239)||(22904704-22904778)
chr4 (165-239)||(22956372-22956446)
chr4 (301-362)||(4913370-4913431)
[»] chr3 (4 HSPs)
chr3 (301-401)||(53553627-53553728)
chr3 (263-353)||(1259319-1259409)
chr3 (263-353)||(37242607-37242697)
chr3 (165-236)||(51042152-51042223)
[»] scaffold0760 (1 HSPs)
scaffold0760 (286-379)||(1722-1815)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 13017215 - 13016919
Alignment:
Q  18 gatcctacataacttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattgg-tttgagattaatttcataactccacataacttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13017215 gatcctacataacttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggctttgagattaatttcataactccacataacttgtt 13017116  T
Q  117 tgcacaatttgaatgttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13017115 tgcacaatttgaatgttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcgacaatttggtcgatttggatggaa 13017016  T
Q  217 agaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13017015 agaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagtggtttcttgggtttggacgttgagtagattaa 13016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 37 - 401
Target Start/End: Original strand, 11272274 - 11272637
Alignment:
Q  37 cattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgttgga 136  Q
    |||||||||||||||||||||||||||||| | || ||||||||| |||||||| |||| || | | |||||||||| ||||  ||||||||||||||||    
T  11272274 cattgtgatgtttcctctttaatttggcgttgtatcttgaattggcttgagattcattttatcattacacataacttatttgtgcaatttgaatgttgga 11272373  T
Q  137 atagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    ||| ||||||    ||||| |  | |||||| || ||||||||||||||||||||||||||||||| |||||| | | |||||||||| |||||||| ||    
T  11272374 ataatgaagttaaatctaagatacttaagaaggggttttggttgatttggcatgcaacaatttggttgatttgaaag-aaagaaatgcaaggattttcaa 11272472  T
Q  237 gaa-caaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctctttta 335  Q
     || |||||  |||||||| |||||| | ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| ||    
T  11272473 taatcaaaga-aaggaagtggaggaaattgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggttaaagatagcttctttcctcttcta 11272571  T
Q  336 tgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgct 401  Q
    |||||| ||||||| ||| |||||||||   ||||||||||||| |  ||||||||||||||||||    
T  11272572 tgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgtttttggatctgct 11272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 13016118 - 13015990
Alignment:
Q  311 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgc----ttaagg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||    
T  13016118 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgtttttggatctgcttaattaagg 13016019  T
Q  407 ggtttgtgttgatctcgggcccctctgtg 435  Q
    |||||||||||||||||||||||||||||    
T  13016018 ggtttgtgttgatctcgggcccctctgtg 13015990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 392
Target Start/End: Complemental strand, 1479794 - 1479434
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    ||||| ||||||||||| ||||||||||||||||     ||||| |||||| ||| ||||||||| || ||||| ||||| |||  ||  |||||||| |    
T  1479794 ttcttacattgtgatgtctcctctttaatttggcaccttattttaaattggcttgggattaattttattactcctcataatttggatgtgcaatttgagt 1479695  T
Q  131 gttggaatagtgaagtgctctctaaaaggcataagaaaggtttttg-gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctagga 229  Q
    ||||| ||| ||| | | |||||||||| || | |||||||||||  ||||||||||  ||| || ||||||| || ||||| |||||||||||| ||||    
T  1479694 gttggtataatgaggcggtctctaaaagacaaaggaaaggtttttttgttgatttggtgtgccaccatttggttgacttggaaggaaagaaatgcaagga 1479595  T
Q  230 tttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttct 329  Q
    |||| |  ||||||| |||||| || || ||  |||| || ||||| ||||||||||| |||| ||||||| ||||||||||||||||| | || || ||    
T  1479594 ttttcaccaacaaagagaaggaggtggaagaggtagttgacgagatcaaagcggtttcgtgggattggacgctgagtagattaaagatagcatcgttcct 1479495  T
Q  330 cttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 392  Q
    ||||||||||||||||||||||||   ||||||| | |||| ||||||||  |||||||||||    
T  1479494 cttttatgagtggacttggaatcc--tagagtgcctaaataaaagatgaaatgtgctgttttt 1479434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 15316524 - 15316594
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggattttta 235  Q
    ||||||||||| |||||||||||| ||  ||||||||  |||||||| |||||| ||||| ||||||||||    
T  15316524 gaaaggtttttagttgatttggcacgcggcaatttggatgatttggagggaaaggaatgcgaggattttta 15316594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 30995318 - 30995389
Alignment:
Q  172 ttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaa 243  Q
    ||||||||||||||||| ||| | ||||||  |||||||| ||| || |||||| |||||||||| ||||||    
T  30995318 ttttggttgatttggcacgcatctatttggatgatttggaaggagaggaatgctcggatttttaaaaacaaa 30995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 34 - 388
Target Start/End: Original strand, 1034039 - 1034394
Alignment:
Q  34 ttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgtt 133  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||| | ||| | |||| || || |||||||||||||||   | ||||||||||||||    
T  1034039 ttgcattgtgatgtctcctccttaatttggcgtggaattttaaattagcttggggttaactttattactccacataacttggccgtacaatttgaatgtt 1034138  T
Q  134 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 233  Q
    ||| || ||| ||| | ||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||| ||||||||    
T  1034139 ggagtaatgaggtggtttctaagagacataagaaaggtttttggttgatttggcacgcgacaatttggttgatttggaaggaaagaaatgcaaggatttt 1034238  T
Q  234 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttt 333  Q
    ||| ||||||| |||||| || |  ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || || ||||||    
T  1034239 taataacaaagcgaaggaggttggtgagatagtggatgagattaaagcggtttcttgggtttggacgttgagtagattaaagatagcatcgttcctcttt 1034338  T
Q  334 tatgagtggacttggaatccgagagagtgctttaata-gaagatgaatggtgctgt 388  Q
    |||||||||||||||||||| | ||||||| | |||| | ||||||| ||||||||    
T  1034339 tatgagtggacttggaatcctaaagagtgcctaaatagggagatgaaaggtgctgt 1034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 31 - 353
Target Start/End: Complemental strand, 2921283 - 2920962
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    ||||| ||||||||||||||||  ||||| |||||| | |||||||||||| | | |||||| || || ||||| |||||||||||||| || ||||  |    
T  2921283 ttcttacattgtgatgtttccttcttaatctggcgtcgtattttgaattggctagggattaactttattactcctcataacttgtttgctcattttgttt 2921184  T
Q  131 gttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggat 230  Q
    |||||||| ||||| ||   || || ||||||||||| | ||||||||||||||||||  | || |||||||||||||||| ||||||||| || |||||    
T  2921183 gttggaatggtgaa-tggaatcgaagaggcataagaaggatttttggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggat 2921085  T
Q  231 ttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctc 330  Q
     || || ||| ||  |||||| || |||||| | ||||| || || |||||  ||||||||||||||| ||||||||| ||||||||| | ||||| |||    
T  2921084 cttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggtttggatgttgagtaggttaaagatagcttctttcctc 2920985  T
Q  331 ttttatgagtggacttggaatcc 353  Q
    |||||||||||||| ||||||||    
T  2920984 ttttatgagtggacatggaatcc 2920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 18246662 - 18246572
Alignment:
Q  263 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 353  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  18246662 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 18246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 32548941 - 32549008
Alignment:
Q  325 tttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 392  Q
    |||||||||||| ||||||||| |||||| ||| | ||  | ||||||||||||| ||||||||||||    
T  32548941 tttctcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgttttt 32549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 8407533 - 8407567
Alignment:
Q  167 aaggtttttggttgatttggcatgcaacaatttgg 201  Q
    |||||||||||||||||||||| ||||||||||||    
T  8407533 aaggtttttggttgatttggcacgcaacaatttgg 8407567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 9936132 - 9936506
Alignment:
Q  30 cttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaa 129  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||||| | | ||| ||||| || || || ||||| |||||||| || |||||     
T  9936132 cttcttgcattgtgatgtctcctctttaatttggcgtggtattttaaattggctcgggatgaattttattacccctcataatttgtttgcgcattttgag 9936231  T
Q  130 tgttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctagga 229  Q
    |||||||||| ||| ||| |||| | ||||| || ||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||  |||    
T  9936232 tgttggaataatgaggtggtctcgagaaggcttaggaaaggttttttgttgatttggcatgccactatttggttgatttggatggaaagaaatgcacgga 9936331  T
Q  230 tttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttct 329  Q
    |||| ||  |||||| |||||| || | |||  |||||||||||||  ||||||| |||||||| |||| |||||| ||| |||||||| | || || ||    
T  9936332 ttttcaatcacaaagagaaggatgttggggagttagtggatgagattgaagcggtgtcttgggtgtggatgttgagcagactaaagatagcatcgttcct 9936431  T
Q  330 cttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg---tttttggatctgct 401  Q
    ||||||||||||||||||||| || ||| ||||| | ||||||||||||| |||||||   ||||||||||||||    
T  9936432 cttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaaaggtgctggcttttttggatctgct 9936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 362
Target Start/End: Original strand, 8273575 - 8273904
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    |||||||||| ||||||  |||| |||||||| ||||| |||||||||||||||||||| ||||| || ||||||||  | || | ||||   || |  |    
T  8273575 ttcttgcattttgatgtgacctcgttaatttgacgtggtattttgaattggtttgagatcaattttattactccacacgatttttgtgcat--ttgggtt 8273672  T
Q  131 gttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggat 230  Q
    ||||||||||||| || | ||| ||||||| ||| || || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  8273673 gttggaatagtgaggttccctccaaaaggcttaaaaaggggttttggttgatttggcatgcgacaatttggtcgatttggaaggaaagaaatgcaaggat 8273772  T
Q  231 ttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctc 330  Q
    |||||| ||  || |||| ||||| |||||  ||||||||||||| || |||||||||||||||||||||  |||||||||||||||| | ||||| |||    
T  8273773 ttttaacaatcaaatgaaagaagtggaggagttagtggatgagattaaggcggtttcttgggtttggacgacgagtagattaaagatagcttctttcctc 8273872  T
Q  331 ttttatgagtggacttggaatccgagagagtg 362  Q
    ||||||||||||| ||||||||| ||||||||    
T  8273873 ttttatgagtggatttggaatcctagagagtg 8273904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 31 - 379
Target Start/End: Complemental strand, 37270190 - 37269843
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    ||||||||||||||||| || |  || |||||||||||| ||||||||||| | || ||||||||  ||||||| |||||| ||||||  |||||||| |    
T  37270190 ttcttgcattgtgatgtgtcttagttgatttggcgtggagttttgaattggctagacattaattttgtaactccgcataacctgtttgtgcaatttgatt 37270091  T
Q  131 gttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggat 230  Q
    ||||||||||||| |||   || ||||| |  || |||||  ||||| ||||||||||||||||||||||| ||||||||| || ||||||||| |||||    
T  37270090 gttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttggcatgcaacaatttggacgatttggaagg-aagaaatgcgaggat 37269992  T
Q  231 ttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctc 330  Q
    |||||||||  ||| |||||| || || ||  | ||||| || || ||||   | |||||| |||||  |||||||||| | |||||| | || || |||    
T  37269991 ttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttatatcttggttttgggtgttgagtagacttaagatagcttccttcctc 37269892  T
Q  331 ttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 379  Q
    ||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  37269891 ttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 379
Target Start/End: Original strand, 42940977 - 42941325
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    ||||||||||||||||| || || ||  ||||||||||| ||||||||||| | || ||||||||  ||||||| |||||| ||||||  |||||||| |    
T  42940977 ttcttgcattgtgatgtgtcttcgttgctttggcgtggagttttgaattggctagacattaattttgtaactccgcataacctgtttgtgcaatttgatt 42941076  T
Q  131 gttggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggat 230  Q
    ||||||||||||| |||   || ||||| |  || |||||  ||||| ||||||| ||||||||||||||| ||||||||| ||||| |||||| |||||    
T  42941077 gttggaatagtgaggtgagttccaaaagactcaaaaaaggggtttggatgatttgacatgcaacaatttggacgatttggaaggaaaaaaatgcgaggat 42941176  T
Q  231 ttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctc 330  Q
    |||||||||  ||| |||||| || || ||  | ||||| || || ||||   | |||||| || ||  |||||||||| |||||||| | || || |||    
T  42941177 ttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttttatcttggtttggggtgttgagtagactaaagatagcttccttcctc 42941276  T
Q  331 ttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 379  Q
    ||||||||||||||||||||||| ||||| ||   ||||||||||||||    
T  42941277 ttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 363
Target Start/End: Complemental strand, 30503202 - 30503004
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaacta 264  Q
    ||||| ||||||||||||||| |||||||| ||||||  |||||||| |||||| ||||| ||||| ||||||||| || | ||  |  | || ||  ||    
T  30503202 gaaagctttttggttgatttgacatgcaactatttggatgatttggaaggaaaggaatgcgaggatctttaagaaccaattcaaaaacttcgatgagata 30503103  T
Q  265 gtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgc 363  Q
    ||||| || || ||||||   ||||||  |||| ||||||||||||| | |||| | ||||  ||||| || ||||||  |||||||||||||||||||    
T  30503102 gtggaagacattaaagcgacatcttggtgttggtcgttgagtagattgaggatagcttcttacctcttctacgagtggtgttggaatccgagagagtgc 30503004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 36404166 - 36404064
Alignment:
Q  277 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 376  Q
    |||| ||| |||||| ||||| ||||||||||| | |||||| | || || ||||| || ||||||||||||||||| ||||| || || ||||||||||    
T  36404166 aaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagat 36404067  T
Q  377 gaa 379  Q
    |||    
T  36404066 gaa 36404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 37484963 - 37484904
Alignment:
Q  177 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    ||||||||||||||   | |||||||| ||||||| |||||| |||||||||||||||||    
T  37484963 gttgatttggcatgtggcgatttggtcaatttggaaggaaaggaatgctaggatttttaa 37484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 37 - 362
Target Start/End: Original strand, 36988772 - 36989097
Alignment:
Q  37 cattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgttgga 136  Q
    ||||||||| |||||||||| ||||||||  | |||||||||||||| ||||||||||| || |||||||||||| | ||||  || ||||| |||||||    
T  36988772 cattgtgatatttcctctttgatttggcgccggattttgaattggttggagattaattttatcactccacataacctttttgtccattttgattgttgga 36988871  T
Q  137 atagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    ||||||||||| |  | || |||| ||| ||||| |||||||||||||||||||| || ||||||| |||||||| |||||||||||| |||||||||||    
T  36988872 atagtgaagtgatgccgaagaggcttaataaagggttttggttgatttggcatgctactatttggttgatttggaaggaaagaaatgcgaggatttttaa 36988971  T
Q  237 gaa-caaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctctttta 335  Q
     || | ||| |||| | || |||||| ||||| | || || |||||||||||||||||||||  ||||||||| || |||||| | ||||| ||||| ||    
T  36988972 taatctaag-gaagaatgtggaggaaatagtgaacgaaatcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttctttcctcttcta 36989070  T
Q  336 tgagtggacttggaatccgagagagtg 362  Q
    | ||||||| |||||||| ||||||||    
T  36989071 taagtggacgtggaatcctagagagtg 36989097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 40296288 - 40296232
Alignment:
Q  49 tcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactcca 105  Q
    |||||| |||||||||||| | | ||| ||||| |||||||||||||||| ||||||    
T  40296288 tcctctctaatttggcgtgaagtcttggattggcttgagattaatttcattactcca 40296232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 34 - 387
Target Start/End: Complemental strand, 42460445 - 42460093
Alignment:
Q  34 ttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgtt 133  Q
    |||||||||||| | |||||||||||||||||||| ||||  |||||| | |  || ||||| || || || ||||| |||||||| || ||||| ||||    
T  42460445 ttgcattgtgatttctcctctttaatttggcgtggtattta-aattggctcggaatgaattttattacccctcataatttgtttgcgcattttgagtgtt 42460347  T
Q  134 ggaatagtgaagtgctctctaaaaggcataagaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttt 233  Q
    |||||| ||| ||| |||| | ||||  || ||||||||||| ||||||||||||||| || ||||||| |||||||| ||||||||||||  |||||||    
T  42460346 ggaataatgaggtggtctcgagaaggattaggaaaggttttttgttgatttggcatgccactatttggttgatttggaaggaaagaaatgcccggatttt 42460247  T
Q  234 taagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttt 333  Q
     ||  | |||| |||||| || | |||  ||||||||||||| |||||||| |||||||| ||||   |||| ||  |||||||| | || || ||||||    
T  42460246 caatcaaaaagagaaggatgttggggagttagtggatgagattaaagcggtgtcttgggtgtggatactgagcaggctaaagatagcatcgttcctcttt 42460147  T
Q  334 tatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg 387  Q
    ||||||| |||||||||||| ||||||||| | ||||||||||||| |||||||    
T  42460146 tatgagtagacttggaatcctagagagtgcctaaatagaagatgaaaggtgctg 42460093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 31234861 - 31234771
Alignment:
Q  263 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 353  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||||||||||||    
T  31234861 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatcc 31234771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 197 - 382
Target Start/End: Complemental strand, 32774309 - 32774124
Alignment:
Q  197 tttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttg 296  Q
    |||||| |||||||| |||||||||||| ||||| || || ||| ||  |||||| || |||||  ||||||||||||| ||||||||||||||||||||    
T  32774309 tttggttgatttggaaggaaagaaatgcaaggatcttcaacaaccaaacgaaggaggttgaggatttagtggatgagatcaaagcggtttcttgggtttg 32774210  T
Q  297 gacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatgg 382  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  32774209 gacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaatgg 32774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 32774451 - 32774336
Alignment:
Q  31 ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaat 130  Q
    ||||| ||||||||||| ||||| |||||||||||||| || ||||||||| |||||||||||||  | ||||||||||||||||||   ||||| || |    
T  32774451 ttcttacattgtgatgtatcctcgttaatttggcgtggcatattgaattggcttgagattaattttgttactccacataacttgtttatgcaattcgatt 32774352  T
Q  131 gttggaatagtgaagt 146  Q
    |||||||||| |||||    
T  32774351 gttggaatagagaagt 32774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 4641106 - 4641000
Alignment:
Q  37 cattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgttgga 136  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||| |||||  ||| ||||| ||||| ||||| || ||||  || |||||||||||||    
T  4641106 cattgtgatgtttcctctttaatttgacgtgaaatcttgaattggcttgagtctaacttcattactcctcataatttatttgttcattttgaatgttgga 4641007  T
Q  137 atagtga 143  Q
    || ||||    
T  4641006 atggtga 4641000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 19586741 - 19586677
Alignment:
Q  172 ttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| |||||||||||| ||||| |||||    
T  19586741 ttttggttggtttggcacgcaacgatttggttgatttggaaggaaagaaatgcaaggatctttaa 19586677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 24722559 - 24722631
Alignment:
Q  164 agaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    |||||| ||||  |||| |||||||||| || ||||||  |||||||| |||||||||| | |||||||||||    
T  24722559 agaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaa 24722631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 379
Target Start/End: Original strand, 2281985 - 2282328
Alignment:
Q  37 cattgtgatgtttcctctttaatttggcgtggaattttgaattggtttgagattaatttcataactccacataacttgtttgcacaatttgaatgttgga 136  Q
    ||||||||||| |||||   |||||||||| | ||||| |||||| | |  || ||||| || ||||| ||||| |||||||  |||||||| |||| ||    
T  2281985 cattgtgatgtctcctcacaaatttggcgtcggattttaaattggctcggaatcaattttatcactcctcataatttgtttgtgcaatttgattgttaga 2282084  T
Q  137 atagtgaagtgctctctaaaaggcataagaaaggtttttg-gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggattttta 235  Q
    ||| ||| ||  | | || |||||||| |||||||||||  ||||||||||||||  ||||||||||  |||||||  ||||| ||||  |||||||| |    
T  2282085 ataatgaggttgtttttagaaggcataggaaaggtttttttgttgatttggcatgtcacaatttggttaatttggaaagaaagcaatgaaaggattttca 2282184  T
Q  236 agaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctctttta 335  Q
    | || ||||||||||  || ||  |  ||||||||||||| ||||||||||||||||| ||| | |||||||||||||||| | | || || ||||| ||    
T  2282185 acaataaagtgaagggtgttgataatttagtggatgagattaaagcggtttcttgggtgtggtcattgagtagattaaagaaagcatcgttcctcttcta 2282284  T
Q  336 tgagtggacttggaatccgagagagtgctttaatagaagatgaa 379  Q
    ||| ||||||| ||| || || || ||| | |||||||||||||    
T  2282285 tgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 16989575 - 16989665
Alignment:
Q  263 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 353  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  16989575 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 16989665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 4913567 - 4913493
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 239  Q
    ||||| ||||| | |||||||||||||  ||||||||  |||||||| |||||||||||| ||||||||||||||    
T  4913567 gaaagcttttttgatgatttggcatgcctcaatttggatgatttggaaggaaagaaatgcgaggatttttaagaa 4913493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 43441534 - 43441460
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 239  Q
    ||||| ||||| | |||||||||||||  ||||||||  |||||||| ||||||||| || ||||||||||||||    
T  43441534 gaaagcttttttgatgatttggcatgcctcaatttggatgatttggaaggaaagaaacgcgaggatttttaagaa 43441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 22904778 - 22904704
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 239  Q
    ||||| ||||| | ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22904778 gaaagcttttttgatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22904704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 22956446 - 22956372
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 239  Q
    ||||| ||||| | ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22956446 gaaagcttttttgatgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22956372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 4913431 - 4913370
Alignment:
Q  301 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 362  Q
    ||||||||||| | |||| | |||| ||||||||| ||||||  ||||||||||||||||||    
T  4913431 ttgagtagattgaggatagcttcttgtctcttttacgagtggtgttggaatccgagagagtg 4913370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 53553728 - 53553627
Alignment:
Q  301 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg-tttttggatctg 399  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||| || |||| ||||||||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctg 53553629  T
Q  400 ct 401  Q
    ||    
T  53553628 ct 53553627  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 1259409 - 1259319
Alignment:
Q  263 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 353  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  1259409 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 1259319  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 37242697 - 37242607
Alignment:
Q  263 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 353  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  37242697 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 37242607  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 51042152 - 51042223
Alignment:
Q  165 gaaaggtttttggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 236  Q
    |||||| || |||||||||||||| ||| ||||||||  |||||||| |||||||||||| ||||| |||||    
T  51042152 gaaagggttgtggttgatttggcacgcatcaatttggatgatttggaaggaaagaaatgcaaggatctttaa 51042223  T

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Target: scaffold0760 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 1815 - 1722
Alignment:
Q  286 tcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 379  Q
    |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  1815 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

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