View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_high_9 (Length: 368)
Name: NF15664_high_9
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 26825849 - 26825493
Alignment:
| Q |
1 |
acaaattgccctaaatgttaattgattttgtaatattttatagtcatcattcatatagactatttaaataagaaacaaatataataactaaatttcttac |
100 |
Q |
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| T |
26825849 |
acaaattgccctaaatgttaattgattttgcaatattttatagtcatcattcatatagactatttaaataagaaacaaatataataactaaatttcttac |
26825750 |
T |
|
| Q |
101 |
ctgcaaagagtaatacatggttgaaaatgaatgcaa---atagtattgaaattaaaacaacaaattgacaattgaaaatgtactcataatatctatggtt |
197 |
Q |
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| T |
26825749 |
ctg----------tacatggttgaaaatgaatgcaattaatagtattgaaattaaaacaacaaattgacaattgaaaatgtactcataatatctatagtt |
26825660 |
T |
|
| Q |
198 |
ttctgcgcatagcaatagtaaaatacaataccttggagactaatttagttactataannnnnnnnnngnnnnnnntttagttactataattgaacttaca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
26825659 |
ttctgcgcatagcaatagtaaaatacaataccttggagactaatttatttactataattatttttttgacaaaaatttagttactataattgaacttaca |
26825560 |
T |
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| Q |
298 |
aaatctcagttagttaatagtatgatggaattgaatttatagaaaagcattatcctctatatattcatct |
367 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825559 |
aaatctcagttagttaa---tatgatggaattgaatttatagaaaagcattatcctctatatattcatct |
26825493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18851987 - 18852049
Alignment:
| Q |
19 |
taattgattttgtaatattttatagtcatcattcatatagactatttaaataagaaacaaata |
81 |
Q |
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| T |
18851987 |
taattgattttgctatgttttataggcatcattcatacaaattatgtaaataagaaacaaata |
18852049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18852062 - 18852126
Alignment:
| Q |
19 |
taattgattttgtaatattttatagtcatcattcat--atagactatttaaataagaaacaaata |
81 |
Q |
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|||||||||||| ||| ||||||||||| ||||||| | | ||||| ||||||||||||||||| |
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| T |
18852062 |
taattgattttgcaatgttttatagtcaccattcatacacaaactatgtaaataagaaacaaata |
18852126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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