View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_low_11 (Length: 366)

Name: NF15664_low_11
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_low_11
NF15664_low_11
[»] chr2 (15 HSPs)
chr2 (1-349)||(8403778-8404123)
chr2 (282-336)||(8411867-8411921)
chr2 (282-336)||(8433965-8434019)
chr2 (271-336)||(8368118-8368183)
chr2 (271-336)||(8401227-8401292)
chr2 (271-336)||(8422804-8422869)
chr2 (284-336)||(8376087-8376139)
chr2 (284-336)||(8431018-8431070)
chr2 (268-327)||(8459649-8459708)
chr2 (283-332)||(8416952-8417001)
chr2 (286-336)||(8405747-8405797)
chr2 (104-140)||(8368314-8368350)
chr2 (104-140)||(8401060-8401096)
chr2 (104-140)||(8422637-8422673)
chr2 (306-342)||(8429640-8429676)
[»] chr4 (2 HSPs)
chr4 (291-349)||(55336093-55336151)
chr4 (290-349)||(55330661-55330720)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 8404123 - 8403778
Alignment:
Q  1 aagaatattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaagatgaaatgaatgaggtaattgaag 100  Q
    ||||| || ||| ||| ||||| ||||||||||||||||   ||| | |||||||| ||||||||||| |||||| |||||||||| |||||||||||||    
T  8404123 aagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaag 8404027  T
Q  101 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8404026 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaat 8403927  T
Q  201 tgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 tgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 8403827  T
Q  301 ggaggacaagttggtatggtgtttgagatgtatagaaactgtggaggat 349  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8403826 ggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggat 8403778  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  282 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  282 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 8368183 - 8368118
Alignment:
Q  271 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8368118  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 8401227 - 8401292
Alignment:
Q  271 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8401292  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 8422804 - 8422869
Alignment:
Q  271 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8422869  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  284 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  284 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  268 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 327  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  283 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 332  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  286 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 336  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
Q  104 tgaagagaaaagatattgaggattatgagagattagg 140  Q
    |||||||||||||||| || |||||||||||||||||    
T  8368350 tgaagagaaaagatatggaagattatgagagattagg 8368314  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
Q  104 tgaagagaaaagatattgaggattatgagagattagg 140  Q
    |||||||||||||||| || |||||||||||||||||    
T  8401060 tgaagagaaaagatatggaagattatgagagattagg 8401096  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
Q  104 tgaagagaaaagatattgaggattatgagagattagg 140  Q
    |||||||||||||||| || |||||||||||||||||    
T  8422637 tgaagagaaaagatatggaagattatgagagattagg 8422673  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 8429676 - 8429640
Alignment:
Q  306 acaagttggtatggtgtttgagatgtatagaaactgt 342  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgt 8429640  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 55336151 - 55336093
Alignment:
Q  291 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggaggat 349  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggat 55336093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 55330720 - 55330661
Alignment:
Q  290 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggaggat 349  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||| ||||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 55330661  T

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