View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_low_13 (Length: 334)

Name: NF15664_low_13
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_low_13
NF15664_low_13
[»] chr5 (16 HSPs)
chr5 (1-327)||(41366166-41366492)
chr5 (40-310)||(41332003-41332273)
chr5 (40-310)||(41327990-41328260)
chr5 (110-306)||(41316027-41316223)
chr5 (40-321)||(41324081-41324362)
chr5 (201-305)||(31188759-31188863)
chr5 (203-305)||(31224950-31225052)
chr5 (39-321)||(41336921-41337203)
chr5 (40-305)||(31178553-31178818)
chr5 (40-306)||(41322077-41322344)
chr5 (201-321)||(41369565-41369685)
chr5 (198-310)||(41430954-41431066)
chr5 (239-305)||(31185277-31185343)
chr5 (44-228)||(41286141-41286325)
chr5 (252-310)||(41359838-41359895)
chr5 (2-120)||(41369703-41369821)
[»] chr4 (1 HSPs)
chr4 (47-303)||(17249293-17249549)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 41366492 - 41366166
Alignment:
Q  1 atgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366492 atgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaat 41366393  T
Q  101 atttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41366392 atttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgcccgcgctgtcatcccaattgttaatgagagaatcatttgag 41366293  T
Q  201 tgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcact 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366292 tgagattaacaaccgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcact 41366193  T
Q  301 taatagctcttcgacacatattcttcg 327  Q
    |||||||||||| ||||||||| ||||    
T  41366192 taatagctcttcaacacatatttttcg 41366166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 41332273 - 41332003
Alignment:
Q  40 ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta 139  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||| ||||||   |||| || || |||||||||| | ||||| ||||||| | ||    
T  41332273 ttgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttcta 41332174  T
Q  140 ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatt 239  Q
    ||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| |||| |  |||||||||| ||||| |||||||||||||||||||||||||    
T  41332173 ttccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgatt 41332074  T
Q  240 taacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctct 310  Q
    |||||||||||| ||| || |||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  41332073 taacaagatttgtcacttcatcttctcttatggacctaaatgattggacacgctttgcacttaatagctct 41332003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 41328260 - 41327990
Alignment:
Q  40 ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta 139  Q
    |||||| | ||||||||||||||||||||||||||    ||||| ||| ||||||   | || || || || ||||| | | ||||| ||||||||| ||    
T  41328260 ttgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtcta 41328161  T
Q  140 ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatt 239  Q
    ||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  41328160 ttccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatccttcacttgcagttattgatt 41328061  T
Q  240 taacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctct 310  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||  ||||| ||||||||||||||||||    
T  41328060 taacaaggtttgacacctcatcttctcttatggacctaaatgattgtacacgctttgcacttaatagctct 41327990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 41316223 - 41316027
Alignment:
Q  110 attgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaa 209  Q
    ||||||||| |||||||||||||||||||  || |||| ||||| || |  |||||||| ||||||  |||   ||| | |||| | |||||||||||||    
T  41316223 attgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaa 41316124  T
Q  210 caactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatag 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| || ||||||||||||| |||||| ||||| ||||||||    
T  41316123 caactgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattggacacgctttgcgcttaatag 41316027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 41324362 - 41324081
Alignment:
Q  40 ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta 139  Q
    |||||| | |||||||||||||||||||||  ||| | |||  |||||||| |   | | ||||||||  | |||||||||||||  ||  ||||||||     
T  41324362 ttgaagcaatttaatagaaggatacaaatcaacaatacaaatgcctcccaacaaacttactatttcctctactgctgatttaaacgattgctggtgtttg 41324263  T
Q  140 ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatt 239  Q
     || |||| ||||| || | ||||| ||| ||||||  ||| | ||||| |||| | |||||||||||||||| |||||||||||||||||||||||||     
T  41324262 ctccttttgccaaaagccgcccgcgttgttatcccatatgtcattgagaaaatcttatgagtgagattaacaattgatccttcacttgcagttattgatg 41324163  T
Q  240 taacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctcttcgacacatat 321  Q
    || |||||||||| || || ||||||||  ||||||||||||||| |||||| |||||||||||||||||| | ||||||||    
T  41324162 tagcaagatttgatacttcatcttctcttgtggacctaaatgattggacacgctttgcacttaatagctctacaacacatat 41324081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 31188759 - 31188863
Alignment:
Q  201 tgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcact 300  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||| |||| |||||| ||||||||    
T  31188759 tgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctcttcttctcttatatacctaaacgattggacacgctttgcact 31188858  T
Q  301 taata 305  Q
    |||||    
T  31188859 taata 31188863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 31225052 - 31224950
Alignment:
Q  203 agattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcactta 302  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||  |||||||||||| |||||| ||||||||||    
T  31225052 agattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctcttcttctcttatatacctaaatgattggacacgctttgcactta 31224953  T
Q  303 ata 305  Q
    |||    
T  31224952 ata 31224950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 321
Target Start/End: Complemental strand, 41337203 - 41336921
Alignment:
Q  39 tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt 138  Q
    ||||||| |||||||||||||||||||| || |||| | ||||| ||||||||||    |||  |||||  |||| |||||| |||| || ||||||| |    
T  41337203 tttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtct 41337104  T
Q  139 attcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgat 238  Q
     |||||||| ||||| ||||  || ||    ||||||   || | ||||| ||||   | || ||||||||| | |||||||||| |||||| |||||||    
T  41337103 gttctttttcccaaacgctgaacgtgccacgatcccataagtcattgagaaaatcgacttagagagattaacgattgatccttcatttgcagatattgat 41337004  T
Q  239 ttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctcttcgacacatat 321  Q
    ||||||||||  ||||||||||||||||| ||| | ||||| |||| ||||||||||||||||||||||||| | ||||||||    
T  41337003 ttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatat 41336921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 305
Target Start/End: Original strand, 31178553 - 31178818
Alignment:
Q  40 ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta 139  Q
    |||||| ||||||||||||||||||| ||| |||| | ||||||||||||  |   |   ||||||||| ||||||||||  ||||||| ||||||||||    
T  31178553 ttgaagcattttaatagaaggatacacatcagcaatacaaaatcctcccatcaaactcgctatttcctttattgctgattggaacacttgttggtgttta 31178652  T
Q  140 ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatt 239  Q
    ||| |||| ||||| ||||  || |  || ||| |   ||| | || || |||| | ||| ||||||| ||||||||||||| ||||| || ||| ||||    
T  31178653 ttccttttcccaaacgctgctcgtgtcgttatcgccgatgtcattgcgaaaatcttatgactgagatttacaactgatcctttacttgtagatatcgatt 31178752  T
Q  240 taacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaata 305  Q
    ||| ||||||||||||||||| |||||| ||  |||||||||||| |||| | |||||||||||||    
T  31178753 taataagatttgacacctcttattctcttatatacctaaatgattggacatgctttgcacttaata 31178818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 41322344 - 41322077
Alignment:
Q  40 ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta 139  Q
    |||||| | ||||||||||||||||||||||||||    ||||| ||| ||||||   | || || || || ||||| | | ||||| ||||||||| ||    
T  41322344 ttgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtcta 41322245  T
Q  140 ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgca-gttattgat 238  Q
    ||| |||| |||||  | | || |||||| ||||||  ||| | ||||| |||| | | | ||||||||||||||||||||||||||  | |||||||||    
T  41322244 ttccttttcccaaaaaccgccctcgctgttatcccatatgtcattgagaaaatcttctcactgagattaacaactgatccttcacttaaaagttattgat 41322145  T
Q  239 ttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatag 306  Q
    ||||||||||||| ||| || |||||||| || ||||||||||||| ||  || ||||||||||||||    
T  41322144 ttaacaagatttgtcacttcatcttctcttatagacctaaatgattggatgcgctttgcacttaatag 41322077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 41369685 - 41369565
Alignment:
Q  201 tgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcact 300  Q
    |||||| ||||||| || ||||||  | || |||||||||||| ||   ||| |||||||||||||| |||||||||||||||| |||||| |||||| |    
T  41369685 tgagatcaacaactaatgcttcaccagtagatattgatttaactagtgatgaaacctcttcttctcttatggacctaaatgattggacacgctttgcatt 41369586  T
Q  301 taatagctcttcgacacatat 321  Q
    |||||||||| | ||||||||    
T  41369585 taatagctctacaacacatat 41369565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 41431066 - 41430954
Alignment:
Q  198 gagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgc 297  Q
    ||||||||||||||| ||||||||||| || |  ||| |||||||| || ||||| |||||||||||||| ||||||  |||||| | ||||| |||||     
T  41431066 gagtgagattaacaattgatccttcacatgtacatatggatttaactagttttgaaacctcttcttctcttatggactgaaatgactggacacattttga 41430967  T
Q  298 acttaatagctct 310  Q
    |||||||||||||    
T  41430966 acttaatagctct 41430954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 31185277 - 31185343
Alignment:
Q  239 ttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaata 305  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||| |||||| |||||||||||||    
T  31185277 ttaacaagatttgacacctcttcttctcttatatacctaaatgattagacacgctttgcacttaata 31185343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 41286325 - 41286141
Alignment:
Q  44 agaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattct 143  Q
    |||| |||||||||||||||||||||  |||   ||||||||||||  ||  | |||  ||||| ||||||| |||| ||  ||||||||||| | ||||    
T  41286325 agaaatttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttct 41286226  T
Q  144 tttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgc 228  Q
    |||| ||||| | ||  ||||| || ||||||   |||  ||| | |||| | ||||||||||||||||||||||||||||||||    
T  41286225 ttttcccaaaagttgcacgcgccgttatcccataggttgttgacaaaatcttctgagtgagattaacaactgatccttcacttgc 41286141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 41359895 - 41359838
Alignment:
Q  252 acacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctct 310  Q
    |||| ||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||    
T  41359895 acacatcttcttctcttatggacctaaatgattggacacatttt-cacttaatagctct 41359838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 41369821 - 41369703
Alignment:
Q  2 tgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaata 101  Q
    ||||||||||| | |||  || ||| || ||||| | ||||||| ||||||||||||||||||||||| ||||   |||||||| |||||| ||| | |     
T  41369821 tgaagtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaataactttattg 41369722  T
Q  102 tttccttcattgctgattt 120  Q
     ||||| ||||||||||||    
T  41369721 attcctccattgctgattt 41369703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 303
Target Start/End: Original strand, 17249293 - 17249549
Alignment:
Q  47 attttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattctttt 146  Q
    ||||| |||||||||||||||||  ||| | ||||||||||||| |   | | ||||||||  ||||||||||| ||||||| ||||||||| ||| |||    
T  17249293 attttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttccttt 17249392  T
Q  147 ttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaag 246  Q
    | || || ||||  |||||    ||||||  |||||| ||   |||| | |||||||||||||||||  |||||||||||| |  |||||||||||||||    
T  17249393 tcccgaaagctgctcgcgccactatcccatatgttaaagaagaaatcttctgagtgagattaacaacacatccttcacttgaaaatattgatttaacaag 17249492  T
Q  247 atttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaa 303  Q
    || | |||| ||||||||||| |  || ||||| |||| |||||||||  |||||||    
T  17249493 atctaacacttcttcttctcttaccgatctaaacgattggacacgtttaacacttaa 17249549  T

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