View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_low_15 (Length: 313)
Name: NF15664_low_15
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 1688209 - 1687921
Alignment:
| Q |
9 |
caaagggtcataatttgctaaaacaataacatcttacaaataagtgatccctatcttcattaacaccacaccctcatgtacacatttgatcattgtagtt |
108 |
Q |
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| T |
1688209 |
caaagggtcataatctgctaaaacaataacatcttacaaataagtgatccttatcttcattaacaccacaccctcatgtacacatttgatcattgtagtt |
1688110 |
T |
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| Q |
109 |
aagaacctccctctcgtgcaagttatctttaacgaagatgcaattgacaaacaacctccaaacaaaaagagagatttttagtggaaccatttttaaccaa |
208 |
Q |
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| T |
1688109 |
aagaacccccctctcgtgcaagttatctttaacgaagatgcaattaacaaacaacctccaaacaaaaagagagatttttagtggaaccacttttaatcaa |
1688010 |
T |
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| Q |
209 |
agaatgttattgttgtcctatgaattgtttacctccacctcaatcaagtaattataagcgctcctcactgaataacatttagaagaatg |
297 |
Q |
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| T |
1688009 |
agaatgttattgttgtcatatgaattgtttacctccacctcaatcaagtaattataagcgctcctcactgaataacatttagaagaatg |
1687921 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 31070931 - 31070996
Alignment:
| Q |
37 |
acatcttacaaataagtgatccctatcttcattaacaccacaccctcatgtacacatttgatcatt |
102 |
Q |
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||||||||||||||| |||||| ||||||||| | |||||| |||| | ||||| |||||||||| |
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| T |
31070931 |
acatcttacaaataattgatccacatcttcattcataccacaacctcctatacacctttgatcatt |
31070996 |
T |
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