View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_low_16 (Length: 305)
Name: NF15664_low_16
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 20226025 - 20225752
Alignment:
| Q |
17 |
acttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccacgtactgtccctaannnnnnnnnnnnnnnttgttcagaca |
116 |
Q |
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| T |
20226025 |
acttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccatgtactgtccctaaatattatatatat--ttgttaagaca |
20225928 |
T |
|
| Q |
117 |
gtgatttcttttgcttaattctgaataa-caaaaaccataatccata------aattaagtatggtatcatcccccatacctcaacatcggcaagatttt |
209 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20225927 |
gtgatttcttttgcttaattctgaataaacaaaaaccataatatatatatttaaattaagtatggta-catcccccatacctcaacatcggcaagatttt |
20225829 |
T |
|
| Q |
210 |
tctatgtgtggtgtcgacatgggtgagcaaaaatgaatttgaatcgacgacactcgacatgccaaatatacaattacg |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
20225828 |
tctatgtgcggtgtcgacatgggtgagcaaaaatgaatttgaat-gtcgacactcgacatgccaaatatacaattacg |
20225752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 44310537 - 44310264
Alignment:
| Q |
17 |
acttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccacgtactgtccctaannnnnnnnnnnnnnnttgttcagaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
44310537 |
acttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccatgtactgtccctaaatattatatatat--ttgttaagaca |
44310440 |
T |
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| Q |
117 |
gtgatttcttttgcttaattctgaataa-caaaaaccataatccata------aattaagtatggtatcatcccccatacctcaacatcggcaagatttt |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44310439 |
gtgatttcttttgcttaattctgaataaacaaaaaccataatatatatatttaaattaagtatggta-catcccccatacctcaacatcggcaagatttt |
44310341 |
T |
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| Q |
210 |
tctatgtgtggtgtcgacatgggtgagcaaaaatgaatttgaatcgacgacactcgacatgccaaatatacaattacg |
287 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
44310340 |
tctatgtgcggtgtcgacatgggtgagcaaaaatgaatttgaat-gtcgacactcgacatgccaaatatacaattacg |
44310264 |
T |
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