View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_low_17 (Length: 299)
Name: NF15664_low_17
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 6441616 - 6441905
Alignment:
| Q |
1 |
gatatttaaaatgttaatcctgtgatatttaaaaataaaaataagtagagatacatatttattgaaaatgttaatcaagtgattaacannnnnnnaatca |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6441616 |
gatatttaaaatgttaatcctacgatatttaaaaataaaaataagtagagatacatatttattgaaaatgttaatcaagtgattaacatttttttaatca |
6441715 |
T |
|
| Q |
101 |
acattttgccaattcttaatataatctcatttggccattcattttacttttgtgttgaactgaaaattgagattgtactcatgctttattgttcgataag |
200 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
6441716 |
acattttgccaattctttataaaatctcatttggccattcattttacttttgtgttgaactgaaaattgagattgtactcgtgctttattgtctgataag |
6441815 |
T |
|
| Q |
201 |
actcaagattcgcagcacactaaagctactcatagagttaacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttct |
290 |
Q |
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| T |
6441816 |
actcaagattcgcagcacaccaaagctactcatagagttaacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttct |
6441905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 6441553 - 6441594
Alignment:
| Q |
47 |
agagatacatatttattgaaaatgttaatcaagtgattaaca |
88 |
Q |
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| T |
6441553 |
agagatacatatttattgaaaatgtgaatcaagtgattaaca |
6441594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 6441290 - 6441343
Alignment:
| Q |
31 |
aaaaataaaaataagtagagatacatatttattgaa-aatgttaatcaagtgat |
83 |
Q |
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|
| T |
6441290 |
aaaaaaaaaaaaaagtagagatacatatttattgaatgatgtcaatcaagtgat |
6441343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 21582398 - 21582247
Alignment:
| Q |
141 |
attttacttttgtgttgaactgaaaattgagattgtactcatgctttattgttcgataagactcaagattcgcagc-acactaaagctactcatagagtt |
239 |
Q |
| |
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|||| ||||| ||||| |||||||||||||| ||||| || |||||| | || |||||||| |||||||| |||| |||| |||| |||||||||||| |
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| T |
21582398 |
atttcactttggtgttaaactgaaaattgagtttgtattcgtgctttgtggtccgataagatccaagattcacagcaacaccaaagttactcatagagta |
21582299 |
T |
|
| Q |
240 |
aacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttctc |
291 |
Q |
| |
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|| ||||| || ||| ||| | || |||||||||||||||||||||||| |
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|
| T |
21582298 |
gacctttccttcgtgcgggtccttctcaaatttgtaaatcaaagttcttctc |
21582247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 289
Target Start/End: Complemental strand, 48554808 - 48554659
Alignment:
| Q |
141 |
attttacttttgtgttgaactgaaaattgagattgtactcatgctttattgttcgataagactcaagattcgcagc-acactaaagctactcatagagtt |
239 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| |||||||| |||||| | || |||||||| ||||||||||||| |||| ||||| ||||||||||| |
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| T |
48554808 |
atttcactttggtgttaaattggaaattgagtttgtactcgtgctttgtggtgcgataagatccaagattcgcagcaacaccaaagcaactcatagagta |
48554709 |
T |
|
| Q |
240 |
aacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttc |
289 |
Q |
| |
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|| |||||||| |||| ||| | || |||||||| |||| |||||||| |
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|
| T |
48554708 |
gacctttccctcttgcaggtccttctcaaatttgtagatcagagttcttc |
48554659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 29966302 - 29966451
Alignment:
| Q |
141 |
attttacttttgtgttgaactgaaaattgagattgtactcatgctttattgttcgataagactcaagattcgcagc-acactaaagctactcatagagtt |
239 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| |||||||| |||||| | || |||||||| ||||||||||||| |||| ||||| ||||||||||| |
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| T |
29966302 |
atttcactttggtgttaaattggaaattgagtttgtactcgtgctttgtggtgcgataagatccaagattcgcagcaacaccaaagccactcatagagta |
29966401 |
T |
|
| Q |
240 |
aacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttc |
289 |
Q |
| |
|
|| |||||||| |||| ||| | || |||||||| |||| |||||||| |
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|
| T |
29966402 |
gacctttccctcttgcaggtccttctcaaatttgtagatcagagttcttc |
29966451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 15886976 - 15887103
Alignment:
| Q |
164 |
aaattgagattgtactcatgctttattgttcgataagactcaagattcgcagca-cactaaagctactcatagagttaacatttccctcatgcaagtctg |
262 |
Q |
| |
|
|||||||| |||||||| |||||| | || |||||||| ||||||| |||||| ||| ||||| ||||||||||| || |||||||| |||| ||| |
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| T |
15886976 |
aaattgagtttgtactcgtgctttgtggtgcgataagatccaagattagcagcaacaccaaagccactcatagagtagacctttccctcctgcaggtcct |
15887075 |
T |
|
| Q |
263 |
tttcgaatttgtaaatcaaagttcttct |
290 |
Q |
| |
|
| || |||||||| |||| ||||||||| |
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|
| T |
15887076 |
tctcaaatttgtagatcagagttcttct |
15887103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 26248282 - 26248431
Alignment:
| Q |
141 |
attttacttttgtgttgaactgaaaattgagattgtactcatgctttattgttcgataagactcaagattcgcagc-acactaaagctactcatagagtt |
239 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| ||||| || |||||| | || |||||||| ||||||||||||| |||| ||||| ||||||||||| |
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|
| T |
26248282 |
atttcactttggtgttaaattggaaattgagtttgtattcgtgctttgtggtgcgataagatccaagattcgcagcaacaccaaagccactcatagagta |
26248381 |
T |
|
| Q |
240 |
aacatttccctcatgcaagtctgtttcgaatttgtaaatcaaagttcttc |
289 |
Q |
| |
|
|| |||||||| |||| ||| | || |||||||| |||| |||||||| |
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|
| T |
26248382 |
gacctttccctcctgcaggtccttctcaaatttgtagatcagagttcttc |
26248431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 32024868 - 32024832
Alignment:
| Q |
255 |
caagtctgtttcgaatttgtaaatcaaagttcttctc |
291 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |
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|
| T |
32024868 |
caagtctttttcgaatttgtaaatcaaaattcttctc |
32024832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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