View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_low_18 (Length: 269)

Name: NF15664_low_18
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_low_18
NF15664_low_18
[»] chr1 (3 HSPs)
chr1 (32-254)||(40744057-40744279)
chr1 (118-207)||(31872931-31873020)
chr1 (149-195)||(48171800-48171846)
[»] chr4 (2 HSPs)
chr4 (41-201)||(38916696-38916858)
chr4 (145-195)||(4592715-4592765)
[»] chr2 (5 HSPs)
chr2 (74-173)||(10307544-10307643)
chr2 (117-201)||(43971844-43971929)
chr2 (124-200)||(26845519-26845596)
chr2 (147-176)||(43531950-43531979)
chr2 (147-195)||(36122058-36122106)
[»] chr3 (1 HSPs)
chr3 (60-165)||(31527967-31528074)
[»] chr6 (3 HSPs)
chr6 (118-202)||(22793297-22793382)
chr6 (125-195)||(22793606-22793677)
chr6 (46-118)||(28645461-28645533)
[»] chr8 (2 HSPs)
chr8 (149-197)||(3111461-3111509)
chr8 (149-195)||(3016045-3016091)
[»] chr7 (1 HSPs)
chr7 (145-173)||(17814001-17814029)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 40744057 - 40744279
Alignment:
Q  32 actttgagagtgccacatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgtagggaacaacttga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40744057 actttgagagtgccacatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgtaaggaacaacttga 40744156  T
Q  132 agctttttaaacgaagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagccatgttttcccccttttattacataaccatta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40744157 agctttttaaacgaagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagccatgttttcccccttttattacataaccatta 40744256  T
Q  232 ttctacatcaatcggtatgatct 254  Q
    |||||||||||| ||||||||||    
T  40744257 ttctacatcaattggtatgatct 40744279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 31872931 - 31873020
Alignment:
Q  118 agggaacaacttgaagctttttaaacgaagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagccatgtttt 207  Q
    ||||| ||||||||| ||||| ||||  || ||||||||||||| ||||||||||| || |||  |||| |||||||| |||||| ||||    
T  31872931 agggaccaacttgaaacttttaaaacatagggaccaacttgaaaactaaaataaacataagggatcaaatatgcaattaagccatatttt 31873020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 48171800 - 48171846
Alignment:
Q  149 gaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatt 195  Q
    ||||||||||||||||||||||||| || ||| ||||| ||||||||    
T  48171800 gaccaacttgaaacctaaaataaacataagggaccaaacatgcaatt 48171846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 38916858 - 38916696
Alignment:
Q  41 gtgccacatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgt-agggaacaacttgaagcttttt 139  Q
    ||||||| || | ||||| | |||||||| |||||||| |||||||||||| |||||||||||||||||| | |||| || || ||||||||| |||| |    
T  38916858 gtgccacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagagatcaacttgaaactttct 38916759  T
Q  140 aaacg-aagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagcca 201  Q
    ||||| | | ||||||| ||||||||||||||||| || ||  || || ||||||||||||||    
T  38916758 aaacgtaggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcca 38916696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 4592715 - 4592765
Alignment:
Q  145 aagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatt 195  Q
    ||||||||||||| ||||||||||||||| || ||| ||||| ||||||||    
T  4592715 aagagaccaacttaaaacctaaaataaacataagggaccaaacatgcaatt 4592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 10307544 - 10307643
Alignment:
Q  74 aaaatatgacggaaaggacgaacttatgttgacatcaataacgtagggaacaacttgaagctttttaaacgaagagaccaacttgaaacctaaaataaac 173  Q
    ||||| ||| |||||| ||||||||||| |||||||| ||||||| ||| ||||||||| ||||||||||| |  ||||||||| |||| ||||||||||    
T  10307544 aaaatttgatggaaagcacgaacttatgctgacatcagtaacgtaaggatcaacttgaaactttttaaacgtaaggaccaacttcaaacataaaataaac 10307643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 43971844 - 43971929
Alignment:
Q  117 tagggaacaacttgaagctttttaaacgaa-gagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagcca 201  Q
    |||||| ||||||||| ||||| ||||  | | ||||||||||||||||||||||||| || ||| ||||| |||||||| |||||    
T  43971844 tagggaccaacttgaaacttttaaaacacatgtgaccaacttgaaacctaaaataaacataagggaccaaacatgcaattaagcca 43971929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 26845519 - 26845596
Alignment:
Q  124 caacttgaagctttttaaacg-aagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagcc 200  Q
    ||||||||| ||||| ||||  ||| ||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||    
T  26845519 caacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacataagggaccaaacatgcaattcagcc 26845596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 176
Target Start/End: Complemental strand, 43531979 - 43531950
Alignment:
Q  147 gagaccaacttgaaacctaaaataaacgta 176  Q
    ||||||||||||||||||||||||||||||    
T  43531979 gagaccaacttgaaacctaaaataaacgta 43531950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 36122058 - 36122106
Alignment:
Q  147 gagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatt 195  Q
    ||||| |||||||||||||| ||||||||| ||| ||||| ||||||||    
T  36122058 gagactaacttgaaacctaatataaacgtaagggaccaaacatgcaatt 36122106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 31528074 - 31527967
Alignment:
Q  60 gacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgtagggaa-caacttgaagctttttaaacg-aagagaccaactt 157  Q
    |||| ||||| |||||||| ||||||||| || ||| |||||||||||||| ||| ||| |||| ||||||||| ||||||||||| | | |||||||||    
T  31528074 gacacagttaactcaaaatttgacggaaatgatgaatttatgttgacatcagtaatgtaaggaaccaacttgaaactttttaaacgtaggtgaccaactt 31527975  T
Q  158 gaaaccta 165  Q
    ||||||||    
T  31527974 gaaaccta 31527967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 22793382 - 22793297
Alignment:
Q  118 agggaacaacttgaagctttttaaacg-aagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagccat 202  Q
    ||||| ||||||||| ||||| ||||  ||| ||||||||||||||||||||||||| || ||| ||||| || ||||| ||||||    
T  22793382 agggaccaacttgaaacttttaaaacataagggaccaacttgaaacctaaaataaacataaggggccaaatatccaattaagccat 22793297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 22793606 - 22793677
Alignment:
Q  125 aacttgaagctttttaaacg-aagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatt 195  Q
    |||||||| ||||| ||||| ||| ||||||||||||||||||||||||| || |||  |||| ||||||||    
T  22793606 aacttgaaacttttaaaacgtaagggaccaacttgaaacctaaaataaacataagggatcaaacatgcaatt 22793677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 28645461 - 28645533
Alignment:
Q  46 acatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgta 118  Q
    ||||||||||||| | |||||||| | |||||| ||| ||||||| | |||||||| | |||||| |||||||    
T  28645461 acatggacgttttagccagagttaacccaaaatttgatggaaagggcaaacttatgctaacatcagtaacgta 28645533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 3111509 - 3111461
Alignment:
Q  149 gaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaattta 197  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  3111509 gaccaacttgaaacctaaaataaacgtaggggaccaatcatgcaattta 3111461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 3016045 - 3016091
Alignment:
Q  149 gaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatt 195  Q
    ||||||||||||||||||||||||| || ||| ||||| ||||||||    
T  3016045 gaccaacttgaaacctaaaataaacttaagggaccaaacatgcaatt 3016091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 17814029 - 17814001
Alignment:
Q  145 aagagaccaacttgaaacctaaaataaac 173  Q
    |||||||||||||||||||||||||||||    
T  17814029 aagagaccaacttgaaacctaaaataaac 17814001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University