View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15664_low_2 (Length: 534)
Name: NF15664_low_2
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 196 - 529
Target Start/End: Complemental strand, 16796541 - 16796208
Alignment:
| Q |
196 |
aatttccgaaaaaatagtattgaaatgcttaacttttctattttagaaagaattatcgctttcttcgctcatgacaacgtggataatcccgaaatcacta |
295 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796541 |
aatttccgaaaaaatagtattcaattgcttaactgttctattttagaaagtattatcgctttcttcgctcatgacaacgtggataatcccgaaatcacta |
16796442 |
T |
|
| Q |
296 |
atcattttctcttctcccattcaccatccatgcacaataatggtgtcattaacaaacaaaaccgaatttcaatacccttaatattcatctcttttctctt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796441 |
atcattttctcttctcccattcaccatccatgcacaataatggtgtcattaacaaacaaaaccgaatttcaatacccttaatattcatctcttttctctt |
16796342 |
T |
|
| Q |
396 |
aacccttccttcaattcaaatgtaccactctcttccaaaagccatttctttagcattgtaatatatacatttgttgttgtgtggtcgccgacgacgccat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796341 |
aacccttccttcaattcaaatgtaccactctcttccaaaagccatttctttagcattgtaatatatacatttgttgttgtgtggtcgccgacgacgccat |
16796242 |
T |
|
| Q |
496 |
catttgccgtcggtgtttgaccaaccacacatct |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16796241 |
catttgccgtcggtgtttgaccaaccacacatct |
16796208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 16796722 - 16796655
Alignment:
| Q |
15 |
taaagcatccgcaaatttaacgtaataattatgcatcaaatgccatctc--acgctactctttaagcc |
80 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
16796722 |
taaagcatccgcgaatataacgtaataattatgcgtcaaatgccatctcaaaagctactctttaagcc |
16796655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University