View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_low_25 (Length: 237)
Name: NF15664_low_25
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 1848043 - 1847838
Alignment:
| Q |
18 |
aggagtttgaagtgcatgatggtgacag-cgttgatctggtagtgatggaagattgcgattgaatttgatggagtgacgcgtgtcaaaattaatcatttg |
116 |
Q |
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| T |
1848043 |
aggagtttgaagtgcatgatggcgacagtcgttgatctggtagtgatggaagactgcgattgaatttgatggagtgacacgtgtcaaaattaatcatttg |
1847944 |
T |
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| Q |
117 |
tagggttccgagttcttacaagctttctttaaacccaaaaagaccattgagttgatcatttgtaagctcctaaagcttaaacggatttgggtccaactaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1847943 |
tagggttccgagttcttacaagctttctttaaacccaaaaaaaccattgagttgatcatttgtacgctcctaaagcttaaacggatttgggtccaactaa |
1847844 |
T |
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| Q |
217 |
gaatta |
222 |
Q |
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||||| |
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| T |
1847843 |
aaatta |
1847838 |
T |
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