View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_low_29 (Length: 227)

Name: NF15664_low_29
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_low_29
NF15664_low_29
[»] chr3 (4 HSPs)
chr3 (7-227)||(36512669-36512888)
chr3 (144-225)||(4127456-4127536)
chr3 (147-197)||(34268891-34268941)
chr3 (149-198)||(50129033-50129082)
[»] chr2 (1 HSPs)
chr2 (51-121)||(30302893-30302963)
[»] chr6 (2 HSPs)
chr6 (136-196)||(15528448-15528508)
chr6 (145-199)||(3441303-3441357)
[»] chr7 (2 HSPs)
chr7 (143-189)||(46277048-46277094)
chr7 (145-223)||(16022144-16022219)
[»] chr4 (1 HSPs)
chr4 (146-223)||(33928126-33928201)
[»] chr1 (1 HSPs)
chr1 (168-225)||(939685-939740)
[»] chr5 (1 HSPs)
chr5 (54-123)||(42838935-42839003)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 36512888 - 36512669
Alignment:
Q  7 tggcccacattctctccacacatgtatttcaatnnnnnnnnnnncatgatccaatggtgcaaacacctcgtgaaaaactcgggacagttttttgttgcag 106  Q
    |||||||||||||||||||||||||||||||||           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36512888 tggcccacattctctccacacatgtatttcaataaaaaaaaaa-catgatacaatggtgcacacacctcgtgaaaaactcgggacagttttttgttgcag 36512790  T
Q  107 ggaatagcactactcttaaattaaattaaataaaaatgggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaacaatttctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36512789 ggaatagcactactcttaaattaaattaaataaaaatgggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaacaatttctt 36512690  T
Q  207 tggaaattatacattcattca 227  Q
    |||||||||||||||||||||    
T  36512689 tggaaattatacattcattca 36512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 4127536 - 4127456
Alignment:
Q  144 gggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaacaatttctttggaaattatacattcatt 225  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||| ||||||||  |||| |||| |||| ||||||||||    
T  4127536 gggaaatgttaacttgtgcccttagggcacaagtttaaaaattaaacatagaaactttttc-ttgggaattgtacattcatt 4127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 34268891 - 34268941
Alignment:
Q  147 aaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaa 197  Q
    ||||||||||||||| ||||||| |||||||||||| |||||| |||||||    
T  34268891 aaatgttaacttgtgctcttgggccacaagtttaaagactaaacatagaaa 34268941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 50129033 - 50129082
Alignment:
Q  149 atgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaac 198  Q
    |||||||||||||  ||||||||| ||||||| |||||||| ||||||||    
T  50129033 atgttaacttgtgcccttggggcataagtttagaaactaaacatagaaac 50129082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 30302963 - 30302893
Alignment:
Q  51 catgatccaatggtgcaaacacctcgtgaaaaactcgggacagttttttgttgcagggaatagcactactc 121  Q
    ||||||||||||||||| | || ||||||||| |||||||||||||||||| || ||||||||||||||||    
T  30302963 catgatccaatggtgcacagacatcgtgaaaagctcgggacagttttttgtcgctgggaatagcactactc 30302893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15528508 - 15528448
Alignment:
Q  136 ataaaaatgggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaa 196  Q
    ||||| || ||||||||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  15528508 ataaagataggaaatgttaacttgtgttcttggggcataagttaaaaaactaaatgtagaa 15528448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 3441357 - 3441303
Alignment:
Q  145 ggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaaca 199  Q
    ||||||||||||||||||||||  |||||||||| ||||| |||| |||||||||    
T  3441357 ggaaatgttaacttgtggtcttaaggcacaagttaaaaaattaaagatagaaaca 3441303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 46277094 - 46277048
Alignment:
Q  143 tgggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaa 189  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  46277094 tgggaaatgttaatttgtgctcttggggcacaagtttagaaactaaa 46277048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 16022219 - 16022144
Alignment:
Q  145 ggaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaacaatttctttggaaattatacattca 223  Q
    ||||||| ||||||||| | ||| |||||||||||| |||||||| ||||||||  ||| ||| |||||||||||||||    
T  16022219 ggaaatgctaacttgtg-tgttgtggcacaagtttagaaactaaacatagaaac--tttttttagaaattatacattca 16022144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 33928126 - 33928201
Alignment:
Q  146 gaaatgttaacttgtggtcttggggcacaagtttaaaaactaaatatagaaacaatttctttggaaattatacattca 223  Q
    ||||||||||||| ||   ||||||||||| |||| |||||||||||| ||||  ||| |||||||||| ||||||||    
T  33928126 gaaatgttaacttatgtcattggggcacaaatttagaaactaaatataaaaac--tttatttggaaattgtacattca 33928201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 939740 - 939685
Alignment:
Q  168 gggcacaagtttaaaaactaaatatagaaacaatttctttggaaattatacattcatt 225  Q
    |||||||||||||||||||||||||||||  | ||||||||| |||| || |||||||    
T  939740 gggcacaagtttaaaaactaaatatagaa--agtttctttgggaattgtatattcatt 939685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 42838935 - 42839003
Alignment:
Q  54 gatccaatggtgcaaacacctcgtgaaaaactcgggacagttttttgttgcagggaatagcactactctt 123  Q
    |||| ||||||||| |||| ||||||||  ||||| ||| |||||||| || ||||||||||||||||||    
T  42838935 gatctaatggtgcacacacgtcgtgaaattctcgg-acatttttttgtcgctgggaatagcactactctt 42839003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University