View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15664_low_6 (Length: 409)
Name: NF15664_low_6
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 50581015 - 50580661
Alignment:
| Q |
1 |
gtggaaaagaggaaaccctaccaccgggatttcgatttcatcctacagatgaagaactcatcacttgctatctcataaacaagatatcagattctagttt |
100 |
Q |
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| T |
50581015 |
gtggaaaagaggaaaccctaccaccgggatttcgatttcatcctacagatgaagaactcatcacttgctatctcataaacaagatatcagattctagttt |
50580916 |
T |
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| Q |
101 |
tacaggcaaagcaataactgatatagatctcaacaaatctgaaccatgggagctaccaggtatgtatacacacgcgcgcgcactattgtgtataacctta |
200 |
Q |
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| T |
50580915 |
tacaggcaaagcaataactgatatagatctcaacaaatctgaaccatgggagctaccaggtatgtatacacacgc--gcgcactagtgtgtataacctta |
50580818 |
T |
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| Q |
201 |
tatga--tccnnnnnnnnnaaggacaccttgtatgattattttagtcccaaataaaccttatgcgatttatgtgcatacatactatatatagttgtaaac |
298 |
Q |
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| T |
50580817 |
tatgattttattttttttgaaggacaccttgtatgattattttagtcccaaataaaccttatgcgatttatgtgcatacatactatatatagttgtaaac |
50580718 |
T |
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| Q |
299 |
attatcatatgatgttgatattctcattaaacaattaagaaagaaaaaattgcgtac |
355 |
Q |
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| T |
50580717 |
attataaaatgatgttgatattctcattaaacaattaagaaagaaaaaattgcgtac |
50580661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 1058233 - 1058392
Alignment:
| Q |
6 |
aaagaggaaaccctaccaccgggatttcgatttcatcctacagatgaagaactcatcacttgctatctcataaacaagatatcagattct---agtttta |
102 |
Q |
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| T |
1058233 |
aaagaggaaaccctacctcctggatttcgatttcatcctaccgatgaagaactcatcacttactatcttgtaaacaagatttcagattctgtaaatttta |
1058332 |
T |
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| Q |
103 |
caggcaaagcaataactgatatagatctcaacaaatctgaaccatgggagctaccaggta |
162 |
Q |
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| T |
1058333 |
catgcaaagcaataggtgatgtagatctcaacaaatgcgagccatgggagcttccaggta |
1058392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 32897412 - 32897448
Alignment:
| Q |
126 |
gatctcaacaaatctgaaccatgggagctaccaggta |
162 |
Q |
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| T |
32897412 |
gatctcaacaagtgtgaaccatgggagctaccaggta |
32897448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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