View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15664_low_7 (Length: 406)

Name: NF15664_low_7
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15664_low_7
NF15664_low_7
[»] chr6 (13 HSPs)
chr6 (1-197)||(5376890-5377086)
chr6 (1-197)||(5378745-5378941)
chr6 (1-197)||(1088676-1088871)
chr6 (1-197)||(19645323-19645518)
chr6 (87-197)||(15868405-15868514)
chr6 (56-197)||(15149116-15149263)
chr6 (22-183)||(9415095-9415255)
chr6 (87-197)||(15866593-15866702)
chr6 (87-197)||(33866112-33866221)
chr6 (87-197)||(33869259-33869368)
chr6 (1-107)||(8915570-8915676)
chr6 (1-93)||(20985831-20985923)
chr6 (10-71)||(24544757-24544818)
[»] chr3 (4 HSPs)
chr3 (1-197)||(17402805-17403001)
chr3 (1-166)||(1140045-1140209)
chr3 (1-197)||(6789633-6789828)
chr3 (37-96)||(9032763-9032822)
[»] chr7 (10 HSPs)
chr7 (1-197)||(20046518-20046715)
chr7 (1-197)||(44963176-44963371)
chr7 (1-197)||(4895597-4895792)
chr7 (1-197)||(28124610-28124806)
chr7 (1-197)||(28126437-28126633)
chr7 (1-111)||(28014296-28014406)
chr7 (87-197)||(37405559-37405668)
chr7 (1-111)||(25471794-25471904)
chr7 (8-88)||(8405628-8405708)
chr7 (70-124)||(4880288-4880343)
[»] chr8 (14 HSPs)
chr8 (1-197)||(30224243-30224438)
chr8 (8-191)||(25249025-25249207)
chr8 (1-197)||(5567439-5567634)
chr8 (1-197)||(6428753-6428949)
chr8 (12-197)||(3379149-3379332)
chr8 (1-197)||(3375457-3375641)
chr8 (12-197)||(31032038-31032217)
chr8 (70-182)||(36535924-36536035)
chr8 (12-99)||(14939625-14939711)
chr8 (12-92)||(19473649-19473728)
chr8 (12-92)||(19544574-19544653)
chr8 (12-92)||(19588043-19588122)
chr8 (141-197)||(14935590-14935646)
chr8 (1-49)||(36535874-36535922)
[»] chr4 (13 HSPs)
chr4 (1-197)||(7040374-7040569)
chr4 (1-197)||(23564698-23564893)
chr4 (1-197)||(18656121-18656316)
chr4 (1-197)||(52520614-52520810)
chr4 (20-184)||(54296454-54296617)
chr4 (1-197)||(52518772-52518968)
chr4 (78-197)||(23566449-23566567)
chr4 (37-197)||(23985787-23985946)
chr4 (82-197)||(3529251-3529365)
chr4 (12-197)||(52545137-52545319)
chr4 (12-98)||(56074680-56074766)
chr4 (1-53)||(23566392-23566444)
chr4 (26-111)||(18395691-18395776)
[»] chr2 (5 HSPs)
chr2 (1-197)||(29758133-29758328)
chr2 (33-121)||(8759119-8759207)
chr2 (12-111)||(18612074-18612174)
chr2 (95-138)||(20516061-20516103)
chr2 (20-60)||(17148670-17148710)
[»] chr1 (15 HSPs)
chr1 (1-197)||(17449324-17449518)
chr1 (1-197)||(16808601-16808797)
chr1 (87-197)||(9312042-9312151)
chr1 (87-197)||(3282814-3282923)
chr1 (87-197)||(3284515-3284624)
chr1 (87-197)||(9310425-9310534)
chr1 (3-164)||(48941646-48941810)
chr1 (20-125)||(5924828-5924932)
chr1 (128-197)||(37664704-37664773)
chr1 (128-197)||(37674426-37674495)
chr1 (128-197)||(37702199-37702268)
chr1 (140-197)||(902090-902147)
chr1 (151-197)||(5924946-5924992)
chr1 (12-92)||(9487458-9487535)
chr1 (160-197)||(48940689-48940726)
[»] scaffold0057 (1 HSPs)
scaffold0057 (12-187)||(58809-58982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (12-197)||(39158-39341)
[»] scaffold0251 (1 HSPs)
scaffold0251 (87-194)||(6242-6348)
[»] chr5 (4 HSPs)
chr5 (96-197)||(39787177-39787277)
chr5 (36-159)||(25076173-25076296)
chr5 (36-159)||(25134142-25134265)
chr5 (14-86)||(20012959-20013030)
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-92)||(19063-19153)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5377086 - 5376890
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  5377086 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaat 5376987  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  5376986 gagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 5376890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5378941 - 5378745
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  5378941 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaat 5378842  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  5378841 gagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 5378745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 1088676 - 1088871
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactctta-gaaactcattgtagaaatgaatagattgataaaagatgatgaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||||  | |||||||||| ||||| ||||||||||||||||||||||||||    
T  1088676 tcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcattatagaa-tgaatagattgataaaagatgatgaa 1088774  T
Q  100 tgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||| || ||| || ||||| |||||||||||||||    
T  1088775 tgagtacaatagtgttcctatatat-agagattagtttgactaactaactctaactaacttctaacaaagctactaactctaatttacttatcaacta 1088871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 19645323 - 19645518
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||| |||||||||||  ||||| ||||||||| |||||||||||  ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  19645323 tcatagatgtaaccaagatagcaagtataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagattgataaaagataatgaat 19645422  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||  ||| ||||| |||||||||| ||| || || ||||||||||||||||||    
T  19645423 gagtacaatagtgttcttatatat-agagattagtttgagtaactacctctgactaatttctaaccaagctactaactttagtttacttatcaacta 19645518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 15868514 - 15868405
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctattaactctagttta 15868416  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  15868415 cctatcaacta 15868405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 15149116 - 15149263
Alignment:
Q  56 agaaactcattgtagaaatgaatagattgataaaagatgatgaatg-----agtacaatagt--gttcctatatataaaagattagtttgagtaactaat 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||||     ||||||| |||  ||||||||||||| || |||| |||||||||||||     
T  15149116 agaaactcattgtagaaatgaatagattgataaaagataatgaatgagtacagtacaacagtacgttcctatatatagaa-attaatttgagtaactaac 15149214  T
Q  149 tctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||||    
T  15149215 tctaactaacttctaaccaagctactgaccctagtttacttatcaacta 15149263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 9415255 - 9415095
Alignment:
Q  22 caaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatgaatgagtacaatagtgttccta 119  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||  |  |||||||||||||||| ||    
T  9415255 caaacataagagtactcatgtgggagatactcatagaaactcattgtagaa-tga-tagatttgattaaaagatgactagagagtacaatagtgttctta 9415158  T
Q  120 tatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagt 183  Q
    |||||| | ||||||||| | ||||||| |||||||||||||||||||| ||| || |||||||    
T  9415157 tatataga-gattagtttcactaactaactctaactaacttctaaccaagctactaactctagt 9415095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 15866702 - 15866593
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    ||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||| |||| ||| || ||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatataga-gattagtttgagtaactaactctaactaacttctacccaagctattaactctagttta 15866604  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  15866603 cctatcaacta 15866593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 33866221 - 33866112
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  33866221 aaaagatagtgaatgagtacaatagtgttcctatatataga-gattagtctgagtaactaactctaactaacttctaaccaagctactaactctagttta 33866123  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  33866122 cctatcaacta 33866112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 33869368 - 33869259
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  33869368 aaaagatagtgaatgcgtacaatagtgttcctatatataga-gattagtttaagtaactaactctaactaacttctaaccaagctactaactctagttta 33869270  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  33869269 cctatcaacta 33869259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 8915676 - 8915570
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||| ||||| |||||| |||||| ||||| |||||||| |||||||| ||| |||||||||||||||| |||||||||| | |||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaatagattaataaaagatgctaaat 8915577  T
Q  101 gagtaca 107  Q
    |||||||    
T  8915576 gagtaca 8915570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 20985831 - 20985923
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagat 93  Q
    |||||| ||||| |||| | |||| |||||| |||||||||||| |||||||  || ||| ||||| ||||||||||||||||||||||||||    
T  20985831 tcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagatacttataaaaattcattatagaaatgaatagattgataaaagat 20985923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 24544818 - 24544757
Alignment:
Q  10 taagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtaga 71  Q
    ||||||||| ||||| |||||| ||||||||| ||||||||||| ||||||||||| |||||    
T  24544818 taagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 17402805 - 17403001
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||    
T  17402805 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaat 17402904  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  17402905 gagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 17403001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1140209 - 1140045
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  1140209 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaat 1140110  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaacc 166  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  1140109 gagtacaatagtgttcctatatat-agagattagtttgagtaactaactctaactaacttctaacc 1140045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 6789828 - 6789633
Alignment:
Q  1 tcatagctgtaagcaa-gatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaa 99  Q
    |||||| ||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||  ||||    
T  6789828 tcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaa-tgaatagattgaaaaaagatagtgaa 6789730  T
Q  100 tgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || |||||||| ||||||| ||||    
T  6789729 tgagtacaatagtattcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttcacttatccacta 6789633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 9032763 - 9032822
Alignment:
Q  37 tcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gataaaagatgat 96  Q
    ||||||||||||||| | ||||||||||| |||| || ||||||||| |||||||||||||    
T  9032763 tcatgtgggagatacccatagaaactcatagtag-aaggaatagattggataaaagatgat 9032822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 20046518 - 20046715
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaa-gatgatgaa 99  Q
    |||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||    
T  20046518 tcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaaagatattgaa 20046617  T
Q  100 tgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  20046618 tgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 20046715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 44963371 - 44963176
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| |||||| |||||||||| |||||| ||| ||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  44963371 tcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagattgataaaagatgatgaat 44963272  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| ||| || | |||||||||||||||||||    
T  44963271 gagtacaatagtgttcctatatat-agagattaatttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaacta 44963176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4895792 - 4895597
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgat-aaaagatgatgaa 99  Q
    |||||| ||||||||||| |||||||||||| |||||||| |||||||||||| |||| |  |||  | ||| |||||| |||||| |||||||||||||    
T  4895792 tcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactcatagagatccatattggaa-tgaatatattgattaaaagatgatgaa 4895694  T
Q  100 tgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  4895693 tgagtacaatagtgttcctatatataga-gattagtttgagtaaataactctaactaacttctaaccaaactactaactctagtttacttatcaacta 4895597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28124610 - 28124806
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||||||||||| |||| |  |||  | ||| |||| | ||| ||| ||||||||||||    
T  28124610 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 28124708  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  28124709 atgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 28124806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28126437 - 28126633
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||||||||||| |||| |  |||  | ||| |||| | ||| ||| ||||||||||||    
T  28126437 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 28126535  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  28126536 atgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 28126633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28014296 - 28014406
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  28014296 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatgaataat 28014395  T
Q  101 gagtacaatag 111  Q
    |||||||||||    
T  28014396 gagtacaatag 28014406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 37405559 - 37405668
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttta 37405657  T
Q  187 cttatcaacta 197  Q
      |||||||||    
T  37405658 tctatcaacta 37405668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25471794 - 25471904
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| |||||| |||||||||| ||||||  || ||| ||||||||||||  |||||||||||| || |||||||||||||||||||||||||  |||    
T  25471794 tcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcattatataaatgaatagattgataaaagatgaataat 25471893  T
Q  101 gagtacaatag 111  Q
    |||||||||||    
T  25471894 gagtacaatag 25471904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8405708 - 8405628
Alignment:
Q  8 tgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataa 88  Q
    ||||||||| ||||||| |||||| ||| ||||| |||||||| || |||||||||||||||||||||| |||||||||||    
T  8405708 tgtaagcaaaatagcaagcataagagtattcatgggggagataatcgtagaaactcattgtagaaatgactagattgataa 8405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 4880343 - 4880288
Alignment:
Q  70 gaaatgaat-agattgataaaagatgatgaatgagtacaatagtgttcctatatat 124  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  4880343 gaaatgaattagattgataaaagatgatgaatgagtataatggtgttcatatatat 4880288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30224438 - 30224243
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||    
T  30224438 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaat 30224339  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  30224338 gagtacaatagtgttcctatatat-agagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaacta 30224243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 25249207 - 25249025
Alignment:
Q  8 tgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtaca 107  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25249207 tgtaagcaagatagcaagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatcatgaatgagtaca 25249108  T
Q  108 atagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttat 191  Q
    ||||||||||||||||| | |||||||||||||||||||  | |||||||||||||||||| ||| || |||||||||||||||    
T  25249107 atagtgttcctatatat-agagattagtttgagtaactacctttaactaacttctaaccaagctactaactctagtttacttat 25249025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5567634 - 5567439
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  5567634 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaat 5567535  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||| ||||||||||| | |||||||||||||||||||| || |||||||||||||| || ||| || ||||||||||  |||||||||    
T  5567534 gagtacaatagttttcctatatat-agagattagtttgagtaactaactccaactaacttctaactaagctactaactctagtttagctatcaacta 5567439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 6428949 - 6428753
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaataga-ttga-taaaagatgatga 98  Q
    |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||  ||||||||||||||| | |||||||| |||| |||||||||||||    
T  6428949 tcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattgtag-agtgaatagatttgattaaaagatgatga 6428851  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||||  |||||||||||| |||| ||  || || |||||||||||||||||||||    
T  6428850 atgattacaatagtgttcctatatat-agagattagtttgagtaactacctctaactaacttttaactaaggtactaactctagtttacttatcaacta 6428753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 3379149 - 3379332
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatag 111  Q
    ||||||| |||||  ||||  ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  3379149 agcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaaaatgatgaatgagtacaatag 3379247  T
Q  112 tgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    | |||||  ||||| | ||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||  |||||||||    
T  3379248 ttttccttaatataga-gattagtttgagtaactaactctaactaacttctaactaaactactaactctagtttaactatcaacta 3379332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3375457 - 3375641
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| |||||| |||||||||| || ||| |||||||||||||||||||||          |||||||||||||||||||||| ||||||| ||||||    
T  3375457 tcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactc----------attgtagaaatgaatagattga-aaaagataatgaat 3375545  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    | ||||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||||||||||    
T  3375546 gggtacaatagagttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaacta 3375641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 31032038 - 31032217
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatag 111  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||  | ||     
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagatcatgaatgagtgtagtaa 31032136  T
Q  112 tgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||| | |||||||||||||||||||| |    ||||||||||||||| ||| || | |||||||||||||||||||    
T  31032137 tgttcctatatat-agagattagtttgagtaactaact----ctaacttctaaccaagctactaaccctagtttacttatcaacta 31032217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 36535924 - 36536035
Alignment:
Q  70 gaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaa 169  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||     
T  36535924 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctatatat-agagattagtttgagtaactaactctaactaacttctaaccaag 36536022  T
Q  170 ctagtagctctag 182  Q
    ||| || ||||||    
T  36536023 ctactaactctag 36536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 14939711 - 14939625
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaa 99  Q
    ||||||| ||||| |||| | |||||||||| | |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  14939711 agcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcattatag-aatgaatagattgataaaagatgatgaa 14939625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 19473728 - 19473649
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaaga 92  Q
    ||||||| |||||  ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||    
T  19473728 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 19544653 - 19544574
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaaga 92  Q
    ||||||| |||||  ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||    
T  19544653 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19544574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 19588043 - 19588122
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaaga 92  Q
    ||||||| |||||  ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||    
T  19588043 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19588122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 14935646 - 14935590
Alignment:
Q  141 taactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||||||  || || ||||||||||| |||||||||    
T  14935646 taactaattctaactaacttctaaccaagttactaactctagtttacctatcaacta 14935590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36535874 - 36535922
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagat 49  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  36535874 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 36535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 7040569 - 7040374
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||    
T  7040569 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaat 7040470  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  7040469 gagtacaatagtgttcctatatat-agagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaacta 7040374  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 23564698 - 23564893
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||    
T  23564698 tcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaat 23564797  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  23564798 gagtacaatagtgttcctatatat-agagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaacta 23564893  T

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Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 18656316 - 18656121
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  18656316 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaat 18656217  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||| || ||| || ||||||||||  |||||||||    
T  18656216 gagtacaatagttttcctatatat-agagattagtttgagtaactaactctaactaacttctaactaagctactaactctagtttagctatcaacta 18656121  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 52520810 - 52520614
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||||| |||||| |||| ||||| |||||| ||||||||||||||||||||| |||| |  |||  | |||||||| | ||| ||| ||||||||||||    
T  52520810 tcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactcatagagatccatatt-gaaatgaaaatatttgattaaaagatgatga 52520712  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  52520711 atgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 52520614  T

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Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 54296617 - 54296454
Alignment:
Q  20 agcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgat-aaaagatgatgaatgagtacaatagtgttcct 118  Q
    ||||| |||||| ||||| ||| ||||||||||| |||||||||||| || |||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  54296617 agcaagcataagagtactgatgagggagatactcatagaaactcattata-aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcct 54296519  T
Q  119 atatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtt 184  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||    
T  54296518 atatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtt 54296454  T

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Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 52518968 - 52518772
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||||| ||||||||||| ||||| |||||| | ||||||||||||||||||| |||| |  |||  | ||| |||| | ||| ||| ||||||||||||    
T  52518968 tcatagatgtaagcaagagagcaagcataagagaactcatgtgggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 52518870  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
     ||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  52518869 ttgagtacaacagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 52518772  T

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Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 23566449 - 23566567
Alignment:
Q  78 tagattgataaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagc 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||| ||| ||      
T  23566449 tagattgataaaagataatgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactacctctaactaacttctaaccaagctactaag 23566547  T
Q  178 tctagtttacttatcaacta 197  Q
    ||||||||||||||||||||    
T  23566548 tctagtttacttatcaacta 23566567  T

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Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 23985946 - 23985787
Alignment:
Q  37 tcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gataaaagatgatgaatgagtacaatagtgttcctatatataaaagattagt 135  Q
    ||||||||||||||  | |||| |||||| | |||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||    
T  23985946 tcatgtgggagataaccatagagactcataggagaa-tcaatagatttgataaaagatggtgaatgagtacaatagtgttcctatatataga-gattagt 23985849  T
Q  136 ttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||| ||||||| |||||||||||||||||||| ||| || ||||||||||| |||||||||    
T  23985848 ttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaacta 23985787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 3529251 - 3529365
Alignment:
Q  82 ttgataaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctcta 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || || ||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaacttta 3529349  T
Q  182 gtttacttatcaacta 197  Q
    |||||| |||||||||    
T  3529350 gtttacctatcaacta 3529365  T

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Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 52545137 - 52545319
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgat-gaatgagtacaata 110  Q
    ||||||| ||| | |||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||  ||||| ||||  |    
T  52545137 agcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagataataaaatga-tacatga 52545234  T
Q  111 gtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||| | || |||| ||| |||||||| |||||| ||||||||||||| ||| || ||||||||||| |||||||||    
T  52545235 gtgttcctatatat-agagtttag-ttgtgtaactaactctaaccaacttctaaccaagctactaactctagtttacctatcaacta 52545319  T

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Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 56074680 - 56074766
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatga 98  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaatagaatgataaaagatgatga 56074766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23566392 - 23566444
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactc 53  Q
    |||||| ||||||||||||||||| |||||| |||| |||| |||||||||||    
T  23566392 tcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactc 23566444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 18395691 - 18395776
Alignment:
Q  26 cataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagat-tgataaaagatgatgaatgagtacaatag 111  Q
    |||||| ||| ||||||||||||||||| || | |||||| ||| |  ||||||||| |||||||||||  ||||||||||||||||    
T  18395691 cataagagtattcatgtgggagatactcatatagactcatagtatag-tgaatagatatgataaaagatagtgaatgagtacaatag 18395776  T

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Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29758328 - 29758133
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||    
T  29758328 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaat 29758229  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  29758228 gagtacaatagtgttcctatatat-agagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaacta 29758133  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 8759119 - 8759207
Alignment:
Q  33 gtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctata 121  Q
    ||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8759119 gtactcatgagggagatactcaaagaaactcattgtagaaatgaacagattgataaaagatgatgaatgagtacaatagtgttcctata 8759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 18612074 - 18612174
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaag-atgatgaatgagtacaata 110  Q
    ||||||| ||||| |||||| |||||||||||||||||| |   | ||||||||| |||||||||||||||||||||||| || |||| |||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaatagattgataaaagtataatgattgagtacaata 18612173  T
Q  111 g 111  Q
    |    
T  18612174 g 18612174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 20516061 - 20516103
Alignment:
Q  95 atgaatgagtacaatagtgttcctatatataaaagattagtttg 138  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  20516061 atgaatgagtacaatagtgttcttatatataaaa-attagtttg 20516103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 17148670 - 17148710
Alignment:
Q  20 agcaaacataagggtactcatgtgggagatactcttagaaa 60  Q
    |||||||||||  ||||||||||||||||||||| ||||||    
T  17148670 agcaaacataacagtactcatgtgggagatactcatagaaa 17148710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 17449518 - 17449324
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaat 100  Q
    |||||| ||||||||||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||| ||||||    
T  17449518 tcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagattga-aaaagataatgaat 17449420  T
Q  101 gagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| || ||| || | |||||||||||||||||||    
T  17449419 gagtacaatagtgttcctatatat-agagattagtttgagtaactaactctaactaacttctaacgaagctactaaccctagtttacttatcaacta 17449324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 16808601 - 16808797
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||||| ||||||||||| ||||| |||||| |||||||||| |||||||||| |||| |  |||  | ||| |||| | ||| ||| ||||||||||||    
T  16808601 tcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactcatagagatccatattggaa-tgaaaatatttgattaaaagatgatga 16808699  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  16808700 atgagtacaatagtgttcatatatataga-gattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaacta 16808797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 9312151 - 9312042
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttta 9312053  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  9312052 cctatcaacta 9312042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 3282923 - 3282814
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttta 3282825  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  3282824 cctatcaacta 3282814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 3284624 - 3284515
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttta 3284526  T
Q  187 cttatcaacta 197  Q
    | |||||||||    
T  3284525 cctatcaacta 3284515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 9310534 - 9310425
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||| ||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  9310534 aaaagataatgaatgagtacaatagtgttcctatatatagat-attaatttgagtaactaactctaactaacttctaaccaagctactaactctagttta 9310436  T
Q  187 cttatcaacta 197  Q
    |||||||||||    
T  9310435 cttatcaacta 9310425  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 48941810 - 48941646
Alignment:
Q  3 atagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgta--gaaatgaatagatt-gat-aaaagatgatga 98  Q
    |||| ||||||||||| |||||  ||||| ||| ||||||| ||||||||| || ||||||||| ||  |||||||||||||| ||| |||||||  |||    
T  48941810 atagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcattatatagaaatgaatagatttgattaaaagatactga 48941711  T
Q  99 atgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaa 164  Q
    |||||||||||||||||  ||| |||| | |||||||||||||||| || ||||||||||||||||    
T  48941710 atgagtacaatagtgtttatatgtataga-gattagtttgagtaaccaactctaactaacttctaa 48941646  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 5924828 - 5924932
Alignment:
Q  20 agcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttccta 119  Q
    ||||| |||||| ||| |||| | |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||  | ||||  ||||||| ||    
T  5924828 agcaagcataagagtattcatataggagatactcatagaaactcattatagaa-tgaatagattgataaaagatgatgaaataatacacgagtgttctta 5924926  T
Q  120 tatata 125  Q
    ||||||    
T  5924927 tatata 5924932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 37664704 - 37664773
Alignment:
Q  128 agattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||| || ||||||||||| |||||||||    
T  37664704 agattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaacta 37664773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 37674426 - 37674495
Alignment:
Q  128 agattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||| || ||||||||||| |||||||||    
T  37674426 agattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaacta 37674495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 37702268 - 37702199
Alignment:
Q  128 agattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||| ||||||| ||||||||| |||||||||| ||| || ||||||||||| |||||||||    
T  37702268 agattagtttgaataactaactctaactaatttctaaccaagctactaactctagtttacctatcaacta 37702199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 902147 - 902090
Alignment:
Q  140 gtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||| |||||||||||||||||||| ||| || ||||||||||| |||||||||    
T  902147 gtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaacta 902090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 5924946 - 5924992
Alignment:
Q  151 taactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||||||||||| || ||||| ||||| |||||||||    
T  5924946 taactaacttctaaccaaactactaactctaatttacctatcaacta 5924992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 9487535 - 9487458
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaaga 92  Q
    ||||||| ||||| ||||||  || ||||||| |||||||||  ||| | ||||||||||| |||||||||||||||||||    
T  9487535 agcaagaaagcaagcataagattattcatgtgagagatactc--agagattcattgtagaa-tgaatagattgataaaaga 9487458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 48940726 - 48940689
Alignment:
Q  160 tctaaccaaactagtagctctagtttacttatcaacta 197  Q
    ||||||||||||| || |||||||||||||||||||||    
T  48940726 tctaaccaaactactaactctagtttacttatcaacta 48940689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 58982 - 58809
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatag 111  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa-tgaatagattgataaaagatgatgaatgagtacaatag 58884  T
Q  112 tgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttac 187  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||    
T  58883 tgttcctatatat-agagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttac 58809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 39341 - 39158
Alignment:
Q  12 agcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatg-aatgagtacaata 110  Q
    ||||||| ||||||  |||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||| ||||  |    
T  39341 agcaagaaagcaaaattaagagtactcatgtgggagatactcataaaaactcattatagaaatgaatagattgataaaagatgatgaaatga-tacatga 39243  T
Q  111 gtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaacta 197  Q
    |||||||||||||| | || |||| ||| |||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||    
T  39242 gtgttcctatatat-agagtttag-ttgtgtaactaactttaactaacttctaaccaagctactaactctagtttacttatcaacta 39158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 6348 - 6242
Alignment:
Q  87 aaaagatgatgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagttta 186  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttta 6250  T
Q  187 cttatcaa 194  Q
    | ||||||    
T  6249 cctatcaa 6242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 39787177 - 39787277
Alignment:
Q  96 tgaatgagtacaatagtgttcctatatataaaagattagtttgagtaactaattctaactaacttctaaccaaactagtagctctagtttacttatcaac 195  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||| |||||||    
T  39787177 tgaatgagtaaaatagtgttcctatatataga-gattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaac 39787275  T
Q  196 ta 197  Q
    ||    
T  39787276 ta 39787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 25076173 - 25076296
Alignment:
Q  36 ctcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatag-tgttcctatatataaaagattag 134  Q
    |||||| | |||||| || |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||| | | |||||||    
T  25076173 ctcatgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatct-agagattag 25076271  T
Q  135 tttgagtaactaattctaactaact 159  Q
    || || | ||| | |||||||||||    
T  25076272 ttggaatgacttactctaactaact 25076296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 25134142 - 25134265
Alignment:
Q  36 ctcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatag-tgttcctatatataaaagattag 134  Q
    |||||| | |||||| || |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||| | | |||||||    
T  25134142 ctcatgagagagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatct-agagattag 25134240  T
Q  135 tttgagtaactaattctaactaact 159  Q
    || || | ||| | |||||||||||    
T  25134241 ttggaatgacttactctaactaact 25134265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 20012959 - 20013030
Alignment:
Q  14 caagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgat 86  Q
    ||||| ||||| |||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  20012959 caagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaattgattgat 20013030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 19153 - 19063
Alignment:
Q  1 tcatagctgtaagcaagatagcaaacataagggtactcatgtgggagatactcttagaaactcattgtagaaatgaatagattgataaaaga 92  Q
    |||||| |||||||||||||| || |||| | ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||    
T  19153 tcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcatagaaactcattatag-aatgaatagattgataaaaga 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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