View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15664_low_8 (Length: 396)
Name: NF15664_low_8
Description: NF15664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15664_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 1013866 - 1013479
Alignment:
| Q |
1 |
tttaatttcagtctttaacctttgccattaaacaatcacaatcttccctgtattttaatttcattgnnnnnnnnntcatacattttcattgaaatatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1013866 |
tttaatttcagtctttaacctttgccattaaacaatcacaatcttccctgtattttaatttcattgaaaaaaaaatcatacattttcattgaaatatttg |
1013767 |
T |
|
| Q |
101 |
atccattgcccttatnnnnnnnnnnnnnnnn-ctgagaaacaaaattcatcgaaaagagaatagaattcaacaactcctaaaactaaaacccataaaatc |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1013766 |
atccattgcccttataaaaagaaaaaaaaaaactgagaaacaaaattcatcgaaaagagaatagaattcaacaactcctaaaactaaaacccataaaatc |
1013667 |
T |
|
| Q |
200 |
caaacttaatttcaatgattctccttcggtgcttatcagtgtactgtgatcaatagcttgtgtgaattagttgagtcttttatgcctttatgttttgaac |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1013666 |
caaacttaatttcaatgattctccttcggtgcttatcagtgtactgtgatcaatagcttgtgtgaattagttgagtcttttatgcctttatgttttgaac |
1013567 |
T |
|
| Q |
300 |
ccattccgtgaaaatttgaagaggaccgtaaagcgtaaaatgttagattcaatttcttggagagatcatctgttgttgttgatgatga |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1013566 |
ccattccgtgaaaatttgaagaggaccgtaaagcgtaaaatgttagattcaatttcttggagagatcatctgttgttgttgatgatga |
1013479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 52916242 - 52916276
Alignment:
| Q |
180 |
aaactaaaacccataaaatccaaacttaatttcaa |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
52916242 |
aaactaaaacccataaaatctaaacttaatttcaa |
52916276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 52916113 - 52916146
Alignment:
| Q |
80 |
acattttcattgaaatatttgatccattgccctt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
52916113 |
acattttcattgaaatattggatccattgccctt |
52916146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 39041957 - 39041857
Alignment:
| Q |
214 |
atgattctccttcggtgcttatcagtgtactgtgatcaatagcttgtgtgaattagttgagtcttttatgcctttatgttttgaacccattccgtgaaaa |
313 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| || |||||||||| |
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|
| T |
39041957 |
atgattctccttcggtgcttagcagagttttgtgatcaatagcttgtgtgaagtagttgagtcgtttatgcttttatgttttgaaaccgatccgtgaaaa |
39041858 |
T |
|
| Q |
314 |
t |
314 |
Q |
| |
|
| |
|
|
| T |
39041857 |
t |
39041857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2502371 - 2502337
Alignment:
| Q |
3 |
taatttcagtctttaacctttgccattaaacaatc |
37 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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|
| T |
2502371 |
taatttcagtcttcaacctttgccattaaacaatc |
2502337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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