View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15665_high_2 (Length: 448)
Name: NF15665_high_2
Description: NF15665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15665_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 2521726 - 2521280
Alignment:
| Q |
1 |
agttataccatatcgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataaccaatgtaggtatttttgaaaacag |
100 |
Q |
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| T |
2521726 |
agttataccataccgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataaccaatgtaggtatttttgaaaacag |
2521627 |
T |
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| Q |
101 |
tggtatcgaatgctcaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagtaaaatgtgagtagtttccaaaat |
200 |
Q |
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| T |
2521626 |
tggtatcgaatgcttaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagtaaaatgtgagtagtttccagaat |
2521527 |
T |
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| Q |
201 |
aatggaatcataggagacatattatatgactcgagatgagtatacgctgcagaaaaacaagaaaaaattactatgtagggcgttgggtgctcgcacaagg |
300 |
Q |
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| T |
2521526 |
aatggaatcataggagacatattatatgactcgagatgagtatacgctgcagaaaaacaagaaaaaattactatgtagggcgttgggtgctcgcacaagg |
2521427 |
T |
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| Q |
301 |
ctctaggcgctgacattatgtatgccaaaatcctgaaaggtattcgccaatatacccttttgcatccaatatacatagattggcaggggcgaaccaaact |
400 |
Q |
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| T |
2521426 |
ctctaggcgctgacattatgtatgccaaaatcctgaagggtattcgccaatatacccttttgcatccaatatacatagattggca-gggcgaaccaaact |
2521328 |
T |
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| Q |
401 |
taaaggttagtgtggataaacacactttggagttatctaagtgtaatc |
448 |
Q |
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| T |
2521327 |
taaaggttagtgtggataaacacactttggagttatctaagtgtaatc |
2521280 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 30283731 - 30283786
Alignment:
| Q |
360 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgg |
415 |
Q |
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| T |
30283731 |
ttgcatccaatatacatttattggtgggggcgaatcgaacttaaaggttagtgtgg |
30283786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 14615344 - 14615288
Alignment:
| Q |
360 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgga |
416 |
Q |
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| T |
14615344 |
ttgcatccaatatacatttattggtgggggcgaatcgaacctaaaggttagtgtgga |
14615288 |
T |
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