View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15665_low_1 (Length: 501)
Name: NF15665_low_1
Description: NF15665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15665_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 2521260 - 2520792
Alignment:
| Q |
17 |
ttcaagtttttattgaagcaacctcacaaaacaagattaaacataaaacatatgcattacctttgcattaattttcaatagaacattaataatgtaatga |
116 |
Q |
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| T |
2521260 |
ttcaagtttttattgaagcaaccccacaaaacaagattaaacataaaacatatgcattacctttgcattaattttcaatagaacattaataatgtaatga |
2521161 |
T |
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| Q |
117 |
tcattaatttttgttggagcaatgcattgtgtcgcaatcccttcatcaacaagacatcttcttttccaaggacctatatattacatattttattaggatt |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521160 |
tcattaatttttgttggagcaatgcattgtgttgcaatcccttcatcaacaagacatcttcttttccaaggacctatatattacatattttattaggatt |
2521061 |
T |
|
| Q |
217 |
ttttaacgaataacgagtgacactaggacattggaacaatgaaaaaataaccattcaaatgaattttgttaactcctaccataaatgttacaattcctgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521060 |
ttttaacgaataacgagtgacactaggacattggaacaatgaaaaaataaccattcaaatgaattttgttaactcctaccataaatgttacaattcctgc |
2520961 |
T |
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| Q |
317 |
taaccggaagaatacacaaaagaagctgagctagaggatgcgtagggggtccaggtagcttggcctttaccatttcatacattcttgcaaccctcgcaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520960 |
taaccggaagaatacacaaaagaagctgagctagaggatgcgtagggggtccaggtagcttggcctttaccatttcatacattcttgcaaccctcgcaaa |
2520861 |
T |
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| Q |
417 |
tggcgactcattcctatggcgaatatcctcttcaaatatgtcgaacggaggatctatgagctacaaaag |
485 |
Q |
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| T |
2520860 |
tggcgactcattcctatggcgaatatcctcttcaaatatgtcgaacggaggatctatgagctacaaaag |
2520792 |
T |
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