View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15665_low_2 (Length: 491)
Name: NF15665_low_2
Description: NF15665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15665_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 4903721 - 4904132
Alignment:
| Q |
1 |
cctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903721 |
cctcctaatctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttgga |
4903820 |
T |
|
| Q |
101 |
gtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggttttt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
4903821 |
gtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggttttt |
4903920 |
T |
|
| Q |
201 |
gggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgt |
300 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903921 |
gggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgt |
4904020 |
T |
|
| Q |
301 |
ttggtggccttctggttgttctgtagtcgtgtttctctggcttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904021 |
ttggtggccttctggttgttctgtagtcgtgtttctctggtttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagct |
4904120 |
T |
|
| Q |
401 |
gcttctttagga |
412 |
Q |
| |
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|||||||||||| |
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| T |
4904121 |
gcttctttagga |
4904132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
163 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
262 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
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| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
263 |
tgttgcggtgatgctg |
278 |
Q |
| |
|
||||||| ||| |||| |
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| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
103 |
atttggaaagcgaggaatgacagaattttcaacaatg |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
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| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 22153836 - 22153441
Alignment:
| Q |
1 |
cctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttgga |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
22153836 |
cctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttgga |
22153737 |
T |
|
| Q |
101 |
gtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
22153736 |
gtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgattttt |
22153637 |
T |
|
| Q |
201 |
gggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
22153636 |
gggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgt |
22153537 |
T |
|
| Q |
301 |
ttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
395 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
22153536 |
ttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22153441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 22209751 - 22209356
Alignment:
| Q |
1 |
cctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttgga |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
22209751 |
cctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttgga |
22209652 |
T |
|
| Q |
101 |
gtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
22209651 |
gtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgattttt |
22209552 |
T |
|
| Q |
201 |
gggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
22209551 |
gggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgt |
22209452 |
T |
|
| Q |
301 |
ttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
395 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
22209451 |
ttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22209356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 53562171 - 53562433
Alignment:
| Q |
7 |
aatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtattt |
106 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| | |||| ||||| ||| || | |||| |||| | ||||||||||||| ||||||||||| | |
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| T |
53562171 |
aatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtgttagaattatttggcatgctgttatttggagtatat |
53562270 |
T |
|
| Q |
107 |
ggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtag |
206 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | || ||||| ||||||||||||||| |||||| || |
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|
| T |
53562271 |
ggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaaggttttgtcttggaggtggagtttgggaag |
53562366 |
T |
|
| Q |
207 |
gttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtga |
273 |
Q |
| |
|
|| || | |||| |||||| || |||||||| |||||||| ||||| |||||| |||||||| |
|
|
| T |
53562367 |
attaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 38185318 - 38185265
Alignment:
| Q |
223 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgc |
276 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatgc |
38185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
173 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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