View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15665_low_4 (Length: 356)
Name: NF15665_low_4
Description: NF15665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15665_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 1029608 - 1029266
Alignment:
| Q |
15 |
aataaaataccaatttatcttgtaagatgaaaat------tatacataccattttttaagaatagtccgatcaannnnnnnn-ccaatgggtatagttag |
107 |
Q |
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| T |
1029608 |
aataaaataccaatttatcttgtaagatgaaaatgaaaattatacacaccattttttaagaatagtctgatcaatttttttttccaatgagtacagttag |
1029509 |
T |
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| Q |
108 |
gcgtggaatacacgggatgttttaaatagggatctatttgaaacattcacaaaaccaaata---taatatcgcgggaaatacttgaggtggtttagggtt |
204 |
Q |
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| T |
1029508 |
gcgtggaatacacgggatgttttaaatagggatctatttgaaacattcacaaaaccaaatagaataatatcgcgggaaatacttgaggtggtttagggtt |
1029409 |
T |
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| Q |
205 |
ttagcatcggccatggggtcgagaccagaggtggttgcaccgtctgagatattctacgacaatgacacagcacacaaatatacctctaattcccgtaaca |
304 |
Q |
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| T |
1029408 |
ttagcatcggccatggggtcgagaccagaggtggttgcaccgcctgagatattctacgacgatgacacatcacacaaatatacctctaattcccgtaaca |
1029309 |
T |
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| Q |
305 |
ttcaaattc-ggttttccctcttcttcttcttctcaaatcaat |
346 |
Q |
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| T |
1029308 |
ttcaaattcaggttttccctcttcttcttcttctcaattcaat |
1029266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 337
Target Start/End: Original strand, 1016131 - 1016252
Alignment:
| Q |
217 |
atggggtcgagaccagaggtggttgcaccgtctgagatattctacgacaatgacacagcacacaaatatacctctaattcccgtaacattcaaattc-gg |
315 |
Q |
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| T |
1016131 |
atgggttcaagaccagaggcggtagctccgccggagatattttacgacgatgatacagcacggaaatatacctctaattcccgtaacattcaaattcagg |
1016230 |
T |
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| Q |
316 |
ttttccctcttcttcttcttct |
337 |
Q |
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| T |
1016231 |
ttttccctcttcttcttcttct |
1016252 |
T |
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